RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NAP1L2Q9ULW6 460 aaPredicted RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 FZD1Q9UP38 647 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 TMX2Q9Y320 296 aa18.84■□□□□ 0.61
SS18-211ENST00000578954 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.84■□□□□ 0.61
SS18-211ENST00000578954 CCDC196A0A1B0GTZ2 297 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 A0A1W2PRG0 241 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 UNCXA6NJT0 531 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 USP17L5A8MUK1 530 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 TRAF5O00463 557 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 KIF3CO14782 793 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 CTDNEP1O95476 244 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 ITGBL1O95965 494 aaPredicted RBP18.83■□□□□ 0.6
SS18-211ENST00000578954 RXRAP19793 462 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 FKBP1BP68106 108 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 NTRK3Q16288 839 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 NUP133Q8WUM0 1156 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 ZKSCAN4Q969J2 545 aaPredicted RBP18.83■□□□□ 0.6
SS18-211ENST00000578954 WDR18Q9BV38 432 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 SNCAIPQ9Y6H5 919 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 PHIPQ8WWQ0 1821 aa18.83■□□□□ 0.6
SS18-211ENST00000578954 PDHBP11177 359 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 PTPRAP18433 802 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 ARMC9Q7Z3E5 817 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 NSUN7Q8NE18 718 aaKnown RBP18.82■□□□□ 0.6
SS18-211ENST00000578954 CTCFLQ8NI51 663 aaPredicted RBP18.82■□□□□ 0.6
SS18-211ENST00000578954 ACER1Q8TDN7 264 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 SH2D4AQ9H788 454 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 PICK1Q9NRD5 415 aa18.82■□□□□ 0.6
SS18-211ENST00000578954 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.82■□□□□ 0.6
SS18-211ENST00000578954 PALM3A6NDB9 673 aaPredicted RBP18.81■□□□□ 0.6
SS18-211ENST00000578954 HSP90AA1P07900 732 aaKnown RBP18.81■□□□□ 0.6
SS18-211ENST00000578954 IFNAR1P17181 557 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 KIF5BP33176 963 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 ADD1P35611 737 aaKnown RBP18.81■□□□□ 0.6
SS18-211ENST00000578954 DDIT3P35638 169 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 ATP2B2Q01814 1243 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 FUT2Q10981 343 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 VGLL4Q14135 290 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 LDLRAD1Q5T700 205 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 TMTC3Q6ZXV5 915 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 ANKRD13AQ8IZ07 590 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 GMCL1Q96IK5 515 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 CWC22Q9HCG8 908 aaKnown RBP18.81■□□□□ 0.6
SS18-211ENST00000578954 MAD2L2Q9UI95 211 aa18.81■□□□□ 0.6
SS18-211ENST00000578954 CDKL5O76039 1030 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 ECE1P42892 770 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 GNAQP50148 359 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 PRKG1Q13976 671 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 ASPRV1Q53RT3 343 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 CPLX2Q6PUV4 134 aaKnown RBP18.8■□□□□ 0.6
SS18-211ENST00000578954 CCDC144CPQ8IYA2 1237 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 DCAF4Q8WV16 495 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 KIAA1683Q9H0B3 1180 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 AS3MTQ9HBK9 375 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 CSADQ9Y600 493 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 TRPM7Q96QT4 1865 aa18.8■□□□□ 0.6
SS18-211ENST00000578954 STK36Q9NRP7 1315 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 F5H6K3 240 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 CPLX1O14810 134 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 NDUFB10O96000 172 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 PARP1P09874 1014 aaKnown RBP18.79■□□□□ 0.6
SS18-211ENST00000578954 SMARCA1P28370 1054 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 HMGN5P82970 282 aaKnown RBP18.79■□□□□ 0.6
SS18-211ENST00000578954 FMR1Q06787 632 aaKnown RBP eCLIP18.79■□□□□ 0.6
SS18-211ENST00000578954 KLRC3Q07444 240 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 ZNF543Q08ER8 600 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 SLFN13Q68D06 897 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 RASGRP2Q7LDG7 609 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 CCDC84Q86UT8 332 aaPredicted RBP18.79■□□□□ 0.6
SS18-211ENST00000578954 LZTS2Q9BRK4 669 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 VCPKMTQ9H867 229 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 SMC3Q9UQE7 1217 aa18.79■□□□□ 0.6
SS18-211ENST00000578954 PASKQ96RG2 1323 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 PTPDC1A2A3K4 754 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 SPDYE5A6NIY4 337 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 JAK2O60674 1132 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 PLEKHA8P1O95397 391 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 GPATCH4Q5T3I0 446 aaKnown RBP18.78■□□□□ 0.6
SS18-211ENST00000578954 MOB2Q70IA6 237 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 NBPF11Q86T75 865 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 STAG2Q8N3U4 1231 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 ZNF280CQ8ND82 737 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 GBA2Q9HCG7 927 aaPredicted RBP18.78■□□□□ 0.6
SS18-211ENST00000578954 GOPCQ9HD26 462 aa18.78■□□□□ 0.6
SS18-211ENST00000578954 CNTNAP5Q8WYK1 1306 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 USP14P54578 494 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 TTLL12Q14166 644 aaPredicted RBP18.77■□□□□ 0.6
SS18-211ENST00000578954 USP17L2Q6R6M4 530 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 SRBD1Q8N5C6 995 aaKnown RBP18.77■□□□□ 0.6
SS18-211ENST00000578954 SPRYD3Q8NCJ5 442 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 C12orf42Q96LP6 360 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 SPZ1Q9BXG8 430 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 RNF26Q9BY78 433 aaPredicted RBP18.77■□□□□ 0.6
SS18-211ENST00000578954 FOXD4L1Q9NU39 408 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 AFG3L2Q9Y4W6 797 aa18.77■□□□□ 0.6
SS18-211ENST00000578954 USP17L10C9JJH3 530 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 CELF2O95319 508 aaKnown RBP18.76■□□□□ 0.59
SS18-211ENST00000578954 FMNL1O95466 1100 aaPredicted RBP18.76■□□□□ 0.59
SS18-211ENST00000578954 FDPSP14324 419 aaKnown RBP18.76■□□□□ 0.59
SS18-211ENST00000578954 GJB2P29033 226 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms