RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 NEDD1Q8NHV4 660 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 CCDC136Q96JN2 1154 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 TRIM47Q96LD4 638 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 P2RX7Q99572 595 aaKnown RBP17.18■□□□□ 0.34
MKS1-207ENST00000578789 DSCC1Q9BVC3 393 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 IL25Q9H293 177 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 RPAP3Q9H6T3 665 aaPredicted RBP17.18■□□□□ 0.34
MKS1-207ENST00000578789 RNF216Q9NWF9 866 aaPredicted RBP17.18■□□□□ 0.34
MKS1-207ENST00000578789 NYAP2Q9P242 653 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 TACC3Q9Y6A5 838 aa17.18■□□□□ 0.34
MKS1-207ENST00000578789 ORC4O43929 436 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 CHMLP26374 656 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 PRMT2P55345 433 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 FCGRTP55899 365 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 LBX2Q6XYB7 198 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 SYNPO2Q9UMS6 1093 aa17.17■□□□□ 0.34
MKS1-207ENST00000578789 WDR46O15213 610 aaKnown RBP17.16■□□□□ 0.34
MKS1-207ENST00000578789 TSPY3P0CV98 308 aa17.16■□□□□ 0.34
MKS1-207ENST00000578789 TSPY8P0CW00 308 aa17.16■□□□□ 0.34
MKS1-207ENST00000578789 POTEEQ6S8J3 1075 aa17.16■□□□□ 0.34
MKS1-207ENST00000578789 RUFY2Q8WXA3 655 aa17.16■□□□□ 0.34
MKS1-207ENST00000578789 NBPF3Q9H094 633 aa17.16■□□□□ 0.34
MKS1-207ENST00000578789 FMNL1O95466 1100 aaPredicted RBP17.15■□□□□ 0.34
MKS1-207ENST00000578789 PCP11498 1178 aaKnown RBP17.15■□□□□ 0.34
MKS1-207ENST00000578789 TFAP4Q01664 338 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 FAM47AQ5JRC9 791 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 ERICH6BQ5W0A0 696 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 STAG1Q8WVM7 1258 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 CEP95Q96GE4 821 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 GOPCQ9HD26 462 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 TXNRD2Q9NNW7 524 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 MTMR4Q9NYA4 1195 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 SRRDQ9UH36 339 aa17.15■□□□□ 0.34
MKS1-207ENST00000578789 SPDYE16A6NNV3 312 aaPredicted RBP17.14■□□□□ 0.33
MKS1-207ENST00000578789 HOXD10P28358 340 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 ATP2B2Q01814 1243 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 BMP2KLQ5H9B9 411 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 SKAP1Q86WV1 359 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 TBC1D10CQ8IV04 446 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 MKL1Q969V6 931 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 INCENPQ9NQS7 918 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 RBPJLQ9UBG7 517 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 PTCH2Q9Y6C5 1203 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 MYPNQ86TC9 1320 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 PLXNB2O15031 1838 aa17.14■□□□□ 0.33
MKS1-207ENST00000578789 DOCK3Q8IZD9 2030 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 TSPY2A6NKD2 308 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 TNPO2O14787 897 aaKnown RBP17.13■□□□□ 0.33
MKS1-207ENST00000578789 CNMDO75829 334 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 TTLL1O95922 423 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 NOVP48745 357 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 HAND2P61296 217 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 ERVK-9P63128 1117 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 ERVK-24P63145 666 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 PPP4R3BQ5MIZ7 849 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 AKNAD1Q5T1N1 836 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 SPICE1Q8N0Z3 855 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 GPRC5AQ8NFJ5 357 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 ARMC5Q96C12 935 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 TANGO6Q9C0B7 1094 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 RABGAP1Q9Y3P9 1069 aa17.13■□□□□ 0.33
MKS1-207ENST00000578789 RBBP6Q7Z6E9 1792 aaKnown RBP17.12■□□□□ 0.33
MKS1-207ENST00000578789 SGSM2O43147 1006 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 PEX10O60683 326 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 CAPN15O75808 1086 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 ECM2O94769 699 aaPredicted RBP17.12■□□□□ 0.33
MKS1-207ENST00000578789 NT5C2P49902 561 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 CACNB1Q02641 598 aaPredicted RBP17.12■□□□□ 0.33
MKS1-207ENST00000578789 COG2Q14746 738 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 GMCL1P1Q8NEA9 526 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 RNF41Q9H4P4 317 aaPredicted RBP17.12■□□□□ 0.33
MKS1-207ENST00000578789 CLIP2Q9UDT6 1046 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 CTNNA3Q9UI47 895 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 COL11A1P12107 1806 aaPredicted RBP17.12■□□□□ 0.33
MKS1-207ENST00000578789 HTTP42858 3142 aa17.12■□□□□ 0.33
MKS1-207ENST00000578789 CCDC85CA6NKD9 419 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 ZNF213O14771 459 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 RANBP6O60518 1105 aaKnown RBP17.11■□□□□ 0.33
MKS1-207ENST00000578789 NDUFB10O96000 172 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 DSG3P32926 999 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 PRKCZQ05513 592 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 MFSD6Q6ZSS7 791 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 PAGR1Q9BTK6 254 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 IL17RBQ9NRM6 502 aa17.11■□□□□ 0.33
MKS1-207ENST00000578789 F5H6K3 240 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 FLOT1O75955 427 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 KLRC3Q07444 240 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 IRF5Q13568 498 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 IMMTQ16891 758 aaKnown RBP17.1■□□□□ 0.33
MKS1-207ENST00000578789 Q3C1V9 767 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 FAM83BQ5T0W9 1011 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 LRRC47Q8N1G4 583 aaKnown RBP17.1■□□□□ 0.33
MKS1-207ENST00000578789 MB21D1Q8N884 522 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 COA7Q96BR5 231 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 TOMM22Q9NS69 142 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 TCP11L1Q9NUJ3 509 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 HOXC10Q9NYD6 342 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 BTBD7Q9P203 1132 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 GABRQQ9UN88 632 aa17.1■□□□□ 0.33
MKS1-207ENST00000578789 NEDD4P46934 1319 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms