RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 GOPCQ9HD26 462 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 PTCH2Q9Y6C5 1203 aa23.14■■□□□ 1.29
SS18-209ENST00000578595 MYPNQ86TC9 1320 aa23.13■■□□□ 1.29
SS18-209ENST00000578595 TSPY2A6NKD2 308 aa23.13■■□□□ 1.29
SS18-209ENST00000578595 ALX1Q15699 326 aa23.13■■□□□ 1.29
SS18-209ENST00000578595 VCPKMTQ9H867 229 aa23.13■■□□□ 1.29
SS18-209ENST00000578595 CWC22Q9HCG8 908 aaKnown RBP23.13■■□□□ 1.29
SS18-209ENST00000578595 TMX2Q9Y320 296 aa23.13■■□□□ 1.29
SS18-209ENST00000578595 RANBP6O60518 1105 aaKnown RBP23.12■■□□□ 1.29
SS18-209ENST00000578595 GNRH1P01148 92 aa23.12■■□□□ 1.29
SS18-209ENST00000578595 CTGFP29279 349 aa23.12■■□□□ 1.29
SS18-209ENST00000578595 SKAP1Q86WV1 359 aa23.12■■□□□ 1.29
SS18-209ENST00000578595 RAET1EQ8TD07 263 aa23.12■■□□□ 1.29
SS18-209ENST00000578595 GTF3C2Q8WUA4 911 aaPredicted RBP23.12■■□□□ 1.29
SS18-209ENST00000578595 RUFY2Q8WXA3 655 aa23.12■■□□□ 1.29
SS18-209ENST00000578595 ISY1Q9ULR0 285 aaKnown RBP23.12■■□□□ 1.29
SS18-209ENST00000578595 PEX10O60683 326 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 TFAP4Q01664 338 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 SLC9C1Q4G0N8 1177 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 CATSPERGQ6ZRH7 1159 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 LPAR1Q92633 364 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 CLIP2Q9UDT6 1046 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 RLFQ13129 1914 aa23.11■■□□□ 1.29
SS18-209ENST00000578595 ZMYM6O95789 1325 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 FLOT1O75955 427 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 SIAH1Q8IUQ4 282 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 GPRC5AQ8NFJ5 357 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 COA7Q96BR5 231 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 CEP95Q96GE4 821 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.1■■□□□ 1.29
SS18-209ENST00000578595 INCENPQ9NQS7 918 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 SRRDQ9UH36 339 aa23.1■■□□□ 1.29
SS18-209ENST00000578595 PRMT2P55345 433 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 PRKCZQ05513 592 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 KIAA1755Q5JYT7 1200 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 WDR78Q5VTH9 848 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 LRRC47Q8N1G4 583 aaKnown RBP23.09■■□□□ 1.29
SS18-209ENST00000578595 ANAPC4Q9UJX5 808 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 PLXNB2O15031 1838 aa23.09■■□□□ 1.29
SS18-209ENST00000578595 KIAA0100Q14667 2235 aaKnown RBP23.09■■□□□ 1.29
SS18-209ENST00000578595 RAD50Q92878 1312 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 A0A0G2JMZ2 1700 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 WDR46O15213 610 aaKnown RBP23.08■■□□□ 1.29
SS18-209ENST00000578595 MYCP01106 439 aaPredicted RBP23.08■■□□□ 1.29
SS18-209ENST00000578595 SOX10P56693 466 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 NEDD1Q8NHV4 660 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 TXNRD2Q9NNW7 524 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 NYAP2Q9P242 653 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 MORF4L1Q9UBU8 362 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 STX8Q9UNK0 236 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.08■■□□□ 1.29
SS18-209ENST00000578595 PLIN4Q96Q06 1357 aa23.08■■□□□ 1.29
SS18-209ENST00000578595 SPDYE16A6NNV3 312 aaPredicted RBP23.07■■□□□ 1.28
SS18-209ENST00000578595 ZNF213O14771 459 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 TTLL1O95922 423 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 CHMLP26374 656 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 ERVK-9P63128 1117 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 ERVK-24P63145 666 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 COG2Q14746 738 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 MFSD6Q6ZSS7 791 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 DSCC1Q9BVC3 393 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 MTMR4Q9NYA4 1195 aa23.07■■□□□ 1.28
SS18-209ENST00000578595 BIN2Q9UBW5 565 aaPredicted RBP23.07■■□□□ 1.28
SS18-209ENST00000578595 IMMTQ16891 758 aaKnown RBP23.06■■□□□ 1.28
SS18-209ENST00000578595 FAM83BQ5T0W9 1011 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 SH3TC2Q8TF17 1288 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 CHMP4CQ96CF2 233 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 NUP88Q99567 741 aaPredicted RBP23.06■■□□□ 1.28
SS18-209ENST00000578595 IL25Q9H293 177 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 RNF41Q9H4P4 317 aaPredicted RBP23.06■■□□□ 1.28
SS18-209ENST00000578595 RBPJLQ9UBG7 517 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 GABRQQ9UN88 632 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 RABGAP1Q9Y3P9 1069 aa23.06■■□□□ 1.28
SS18-209ENST00000578595 IGKV6D-41A0A0C4DH26 115 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 ORC4O43929 436 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 CCNA1P78396 465 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 PLS1Q14651 629 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 PPP4R3BQ5MIZ7 849 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 AKNAD1Q5T1N1 836 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 NBPF11Q86T75 865 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 CTNNA3Q9UI47 895 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 MTMR7Q9Y216 660 aa23.05■■□□□ 1.28
SS18-209ENST00000578595 F5H6K3 240 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 NMT2O60551 498 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 NDUFB10O96000 172 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 KLRC3Q07444 240 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 TBC1D10CQ8IV04 446 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 HOXC10Q9NYD6 342 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 TACC3Q9Y6A5 838 aa23.04■■□□□ 1.28
SS18-209ENST00000578595 FLT3LGP49771 235 aa23.03■■□□□ 1.28
SS18-209ENST00000578595 STAG1Q8WVM7 1258 aa23.03■■□□□ 1.28
SS18-209ENST00000578595 ATG4CQ96DT6 458 aa23.03■■□□□ 1.28
SS18-209ENST00000578595 FBXO28Q9NVF7 368 aa23.03■■□□□ 1.28
SS18-209ENST00000578595 NEDD4P46934 1319 aa23.03■■□□□ 1.28
SS18-209ENST00000578595 ZNFX1Q9P2E3 1918 aaKnown RBP23.02■■□□□ 1.28
SS18-209ENST00000578595 RBBP6Q7Z6E9 1792 aaKnown RBP23.02■■□□□ 1.28
SS18-209ENST00000578595 MAPK4P31152 587 aa23.02■■□□□ 1.28
SS18-209ENST00000578595 GRK4P32298 578 aa23.02■■□□□ 1.28
SS18-209ENST00000578595 Q3C1V9 767 aa23.02■■□□□ 1.28
SS18-209ENST00000578595 ESR2Q92731 530 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms