RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CDX2Q99626 313 aaPredicted RBP16.5■□□□□ 0.23
CCDC40-216ENST00000576241 PORCNQ9H237 461 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 C11orf49Q9H6J7 331 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 SMARCA5O60264 1052 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-216ENST00000576241 GLRX3O76003 335 aaKnown RBP16.49■□□□□ 0.23
CCDC40-216ENST00000576241 CYP2D6P10635 497 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 XRCC5P13010 732 aaKnown RBP16.49■□□□□ 0.23
CCDC40-216ENST00000576241 GUCY1A2P33402 732 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 PLA2G5P39877 138 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 MDM2Q00987 491 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-216ENST00000576241 UBE3CQ15386 1083 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 ZNF697Q5TEC3 545 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 CATSPERGQ6ZRH7 1159 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 TMEM179Q6ZVK1 233 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 GPR142Q7Z601 462 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 PLEKHH3Q7Z736 793 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 TRIB2Q92519 343 aa16.49■□□□□ 0.23
CCDC40-216ENST00000576241 RPAP3Q9H6T3 665 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-216ENST00000576241 PRKAB2O43741 272 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 ZKSCAN1P17029 563 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-216ENST00000576241 RGS2P41220 211 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 EVX2Q03828 476 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 Q3C1V9 767 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 SLFNL1Q499Z3 407 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 SLC44A5Q8NCS7 719 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 ECHDC1Q9NTX5 307 aa16.48■□□□□ 0.23
CCDC40-216ENST00000576241 PRKAR2AP13861 404 aaKnown RBP16.47■□□□□ 0.23
CCDC40-216ENST00000576241 TRIM32Q13049 653 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 WDR78Q5VTH9 848 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 POTEEQ6S8J3 1075 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 LBX2Q6XYB7 198 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 DYNLL2Q96FJ2 89 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 APBA2Q99767 749 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 TANGO6Q9C0B7 1094 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 SH2D4AQ9H788 454 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 SLC4A4Q9Y6R1 1079 aa16.47■□□□□ 0.23
CCDC40-216ENST00000576241 CNMDO75829 334 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 MORN1Q5T089 497 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 FAM122AQ96E09 287 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 CCDC17Q96LX7 622 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 ARHGEF10LQ9HCE6 1279 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 IVNS1ABPQ9Y6Y0 642 aa16.46■□□□□ 0.23
CCDC40-216ENST00000576241 A0A1W2PRG0 241 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 SPDYE16A6NNV3 312 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-216ENST00000576241 USP17L12C9JPN9 530 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 USP17L21D6R901 530 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 TNFRSF10AO00220 468 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 ICA1Q05084 483 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 MAP2K5Q13163 448 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 MAP3K21Q5TCX8 1036 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 C12orf60Q5U649 245 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 USP6NLQ92738 828 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 DCTPP1Q9H773 170 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 HOXC10Q9NYD6 342 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 PFASO15067 1338 aa16.45■□□□□ 0.22
CCDC40-216ENST00000576241 CYP2D7A0A087X1C5 515 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 CHGBP05060 677 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 AKR1B1P15121 316 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 CDK8P49336 464 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 COG2Q14746 738 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 C16orf86Q6ZW13 317 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 LPAR1Q92633 364 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 PUS7LQ9H0K6 701 aaKnown RBP16.44■□□□□ 0.22
CCDC40-216ENST00000576241 BTBD7Q9P203 1132 aa16.44■□□□□ 0.22
CCDC40-216ENST00000576241 SLC15A5A6NIM6 579 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 PTPREP23469 700 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 CACNB2Q08289 660 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-216ENST00000576241 CCL14Q16627 93 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 MFSD14CQ5VZR4 134 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 KBTBD3Q8NAB2 608 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 MYLIPQ8WY64 445 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 SEMA6BQ9H3T3 888 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 ARPP21Q9UBL0 812 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-216ENST00000576241 OGDHLQ9ULD0 1010 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 TMX2Q9Y320 296 aa16.43■□□□□ 0.22
CCDC40-216ENST00000576241 PLXNB2O15031 1838 aa16.42■□□□□ 0.22
CCDC40-216ENST00000576241 ZFYP08048 801 aaPredicted RBP16.42■□□□□ 0.22
CCDC40-216ENST00000576241 CTR9Q6PD62 1173 aa16.42■□□□□ 0.22
CCDC40-216ENST00000576241 CLEC10AQ8IUN9 316 aa16.42■□□□□ 0.22
CCDC40-216ENST00000576241 MB21D1Q8N884 522 aa16.42■□□□□ 0.22
CCDC40-216ENST00000576241 CDH23Q9H251 3354 aa16.42■□□□□ 0.22
CCDC40-216ENST00000576241 TMEM265A0A087WTH1 108 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 FLOT1O75955 427 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 HOXD11P31277 338 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-216ENST00000576241 ATP2B2Q01814 1243 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 GRB14Q14449 540 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 LRRFIP1Q32MZ4 808 aaKnown RBP16.41■□□□□ 0.22
CCDC40-216ENST00000576241 TSHZ3Q63HK5 1081 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 SPICE1Q8N0Z3 855 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 APPBP2Q92624 585 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 STRBPQ96SI9 672 aaKnown RBP16.41■□□□□ 0.22
CCDC40-216ENST00000576241 VCPKMTQ9H867 229 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 KANSL2Q9H9L4 492 aa16.41■□□□□ 0.22
CCDC40-216ENST00000576241 SMIM22K7EJ46 135 aa16.4■□□□□ 0.22
CCDC40-216ENST00000576241 ERC2O15083 957 aa16.4■□□□□ 0.22
CCDC40-216ENST00000576241 WDR46O15213 610 aaKnown RBP16.4■□□□□ 0.22
CCDC40-216ENST00000576241 RNF113AO15541 343 aaKnown RBP16.4■□□□□ 0.22
CCDC40-216ENST00000576241 HOXC6P09630 235 aa16.4■□□□□ 0.22
CCDC40-216ENST00000576241 CCND3P30281 292 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-216ENST00000576241 PLS1Q14651 629 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms