RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GOPCQ9HD26 462 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 GRM1Q13255 1194 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 COL9A3Q14050 684 aaPredicted RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 WTAPQ15007 396 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 IFIT1BQ5T764 474 aaKnown RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 USP17L2Q6R6M4 530 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 TMOD4Q9NZQ9 345 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 SH2B2O14492 632 aaPredicted RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 HMGCS2P54868 508 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 FASTKD5Q7L8L6 764 aaKnown RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 LRRC47Q8N1G4 583 aaKnown RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 PROCA1Q8NCQ7 364 aaPredicted RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 IGDCC4Q8TDY8 1250 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 LPAR1Q92633 364 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 MS4A4AQ96JQ5 239 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 C12orf42Q96LP6 360 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 TMEM47Q9BQJ4 181 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 WDR33Q9C0J8 1336 aaKnown RBP20.06■□□□□ 0.8
NUP88-210ENST00000574867 VCPKMTQ9H867 229 aa20.06■□□□□ 0.8
NUP88-210ENST00000574867 SREBF2Q12772 1141 aa20.05■□□□□ 0.8
NUP88-210ENST00000574867 TMTC2Q8N394 836 aa20.05■□□□□ 0.8
NUP88-210ENST00000574867 GMCL1P1Q8NEA9 526 aa20.05■□□□□ 0.8
NUP88-210ENST00000574867 KAT14Q9H8E8 782 aa20.05■□□□□ 0.8
NUP88-210ENST00000574867 LIFRP42702 1097 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 INHBEP58166 350 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 REM2Q8IYK8 340 aaPredicted RBP20.04■□□□□ 0.8
NUP88-210ENST00000574867 FBXL16Q8N461 479 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 UPF3BQ9BZI7 483 aaKnown RBP20.04■□□□□ 0.8
NUP88-210ENST00000574867 CCL15-CCL14A0A0B4J2E2 113 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 CPA1P15085 419 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 VEGFBP49765 207 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 ZYXQ15942 572 aaKnown RBP20.04■□□□□ 0.8
NUP88-210ENST00000574867 CCL15Q16663 113 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 LY9Q9HBG7 655 aa20.04■□□□□ 0.8
NUP88-210ENST00000574867 TESPA1A2RU30 521 aaPredicted RBP20.03■□□□□ 0.8
NUP88-210ENST00000574867 FGD1P98174 961 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 IL27Q8NEV9 243 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 TCEANC2Q96MN5 208 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 EMILIN3Q9NT22 766 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 MAP2K2P36507 400 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 SGMS1Q86VZ5 419 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 PNMA1Q8ND90 353 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 KIF2CQ99661 725 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 LRRC2Q9BYS8 371 aa20.03■□□□□ 0.8
NUP88-210ENST00000574867 F5H6K3 240 aa20.02■□□□□ 0.8
NUP88-210ENST00000574867 KLRC3Q07444 240 aa20.02■□□□□ 0.8
NUP88-210ENST00000574867 GADL1Q6ZQY3 521 aa20.02■□□□□ 0.8
NUP88-210ENST00000574867 BRI3BPQ8WY22 251 aa20.02■□□□□ 0.8
NUP88-210ENST00000574867 AGXT2Q9BYV1 514 aa20.02■□□□□ 0.8
NUP88-210ENST00000574867 WDR46O15213 610 aaKnown RBP20.01■□□□□ 0.79
NUP88-210ENST00000574867 NDUFB10O96000 172 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 VCAM1P19320 739 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 KIF23Q02241 960 aaPredicted RBP20.01■□□□□ 0.79
NUP88-210ENST00000574867 MOGSQ13724 837 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 RABEP1Q15276 862 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 Q6ZUG5 572 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 GMCL1Q96IK5 515 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 PDRG1Q9NUG6 133 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 AGTPBP1Q9UPW5 1226 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 CCDC69A6NI79 296 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 RAD21O60216 631 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 AOC2O75106 756 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 NFXL1Q6ZNB6 911 aa20.01■□□□□ 0.79
NUP88-210ENST00000574867 ALDH8A1Q9H2A2 487 aaPredicted RBP20.01■□□□□ 0.79
NUP88-210ENST00000574867 PABPC4Q13310 644 aaKnown RBP eCLIP20■□□□□ 0.79
NUP88-210ENST00000574867 DGKZQ13574 1117 aa20■□□□□ 0.79
NUP88-210ENST00000574867 SLFN13Q68D06 897 aa20■□□□□ 0.79
NUP88-210ENST00000574867 CATIPQ7Z7H3 387 aa20■□□□□ 0.79
NUP88-210ENST00000574867 ANKRD23Q86SG2 305 aa20■□□□□ 0.79
NUP88-210ENST00000574867 DCAF4Q8WV16 495 aa20■□□□□ 0.79
NUP88-210ENST00000574867 ZCCHC17Q9NP64 241 aaKnown RBP20■□□□□ 0.79
NUP88-210ENST00000574867 GPHNQ9NQX3 736 aaPredicted RBP20■□□□□ 0.79
NUP88-210ENST00000574867 SLC45A1Q9Y2W3 748 aa20■□□□□ 0.79
NUP88-210ENST00000574867 DDAH1O94760 285 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 TM4SF4P48230 202 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 NEK4P51957 841 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 SPICE1Q8N0Z3 855 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 SENP2Q9HC62 589 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 KIAA1755Q5JYT7 1200 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 OTUD7BQ6GQQ9 843 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 ZNF654Q8IZM8 581 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 BRF1Q92994 677 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 SLC12A7Q9Y666 1083 aa19.99■□□□□ 0.79
NUP88-210ENST00000574867 SNHG28P0DPA3 235 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 PDHBP11177 359 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 SLC1A4P43007 532 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 ANKRD1Q15327 319 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 TREML2Q5T2D2 321 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 GPAT2Q6NUI2 795 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 ZIC5Q96T25 663 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 BTBD19C9JJ37 291 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 CALM1P0DP23 149 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 CALM2P0DP24 149 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 CALM3P0DP25 149 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 HOXA7P31268 230 aaPredicted RBP19.98■□□□□ 0.79
NUP88-210ENST00000574867 SYNE3Q6ZMZ3 975 aa19.98■□□□□ 0.79
NUP88-210ENST00000574867 RPAP3Q9H6T3 665 aaPredicted RBP19.98■□□□□ 0.79
NUP88-210ENST00000574867 USP17L15C9J2P7 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L13C9JLJ4 530 aa19.97■□□□□ 0.79
NUP88-210ENST00000574867 USP17L11C9JVI0 530 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms