RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 LBX1P52954 281 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 GPSM2P81274 684 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 GRM1Q13255 1194 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 CST9Q5W186 159 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 SAPCD2Q86UD0 394 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 SLC51AQ86UW1 340 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 NLRP8Q86W28 1048 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 ANKRD18AQ8IVF6 992 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 RGL4Q8IZJ4 473 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 TBC1D16Q8TBP0 767 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 FOXD4L4Q8WXT5 416 aaPredicted RBP11.81□□□□□ -0.52
CIITA-208ENST00000572665 EDEM1Q92611 657 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 DCPSQ96C86 337 aaKnown RBP11.81□□□□□ -0.52
CIITA-208ENST00000572665 CITED4Q96RK1 184 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 PHAXQ9H814 394 aaKnown RBP11.81□□□□□ -0.52
CIITA-208ENST00000572665 DBNDD1Q9H9R9 158 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 GGA1Q9UJY5 639 aa11.81□□□□□ -0.52
CIITA-208ENST00000572665 PCNTO95613 3336 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 ANKRD33BA6NCL7 494 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 PSMD14O00487 310 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 OPLAHO14841 1288 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 UFL1O94874 794 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 SNRPBP14678 240 aaKnown RBP11.8□□□□□ -0.52
CIITA-208ENST00000572665 DNM1Q05193 864 aaKnown RBP11.8□□□□□ -0.52
CIITA-208ENST00000572665 CYP4F22Q6NT55 531 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 KSR2Q6VAB6 950 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 ZSCAN29Q8IWY8 852 aaPredicted RBP11.8□□□□□ -0.52
CIITA-208ENST00000572665 ZNF428Q96B54 188 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 GLIS2Q9BZE0 524 aaPredicted RBP11.8□□□□□ -0.52
CIITA-208ENST00000572665 ZNF408Q9H9D4 720 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 POLLQ9UGP5 575 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 POLIQ9UNA4 740 aa11.8□□□□□ -0.52
CIITA-208ENST00000572665 PDGFAP04085 211 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 THBS1P07996 1170 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 HSPA8P11142 646 aaKnown RBP11.79□□□□□ -0.52
CIITA-208ENST00000572665 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
CIITA-208ENST00000572665 TYRO3Q06418 890 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 LBRQ14739 615 aaKnown RBP11.79□□□□□ -0.52
CIITA-208ENST00000572665 SAMD5Q5TGI4 173 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 RIPOR1Q6ZS17 1223 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 CCDC155Q8N6L0 562 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 C8orf58Q8NAV2 365 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 GPR152Q8TDT2 470 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 FAM13BQ9NYF5 915 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 MAP3K2Q9Y2U5 619 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 XDHP47989 1333 aa11.79□□□□□ -0.52
CIITA-208ENST00000572665 INPP5BP32019 993 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 ARSDP51689 593 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 NOGQ13253 232 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 EFHC2Q5JST6 749 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 KRT26Q7Z3Y9 468 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 TMC7Q7Z402 723 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 NPAS4Q8IUM7 802 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 C2orf69Q8N8R5 385 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 AGBL3Q8NEM8 1001 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 TRPM4Q8TD43 1214 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 PSME4Q14997 1843 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 IL16Q14005 1332 aa11.78□□□□□ -0.52
CIITA-208ENST00000572665 POLR2AP24928 1970 aaKnown RBP11.78□□□□□ -0.52
CIITA-208ENST00000572665 PI4KAP2A4QPH2 592 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.53
CIITA-208ENST00000572665 CTSWP56202 376 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 FMR1Q06787 632 aaKnown RBP eCLIP11.77□□□□□ -0.53
CIITA-208ENST00000572665 KIF4BQ2VIQ3 1234 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 TWISTNBQ3B726 338 aaPredicted RBP11.77□□□□□ -0.53
CIITA-208ENST00000572665 TBC1D10BQ4KMP7 808 aaPredicted RBP11.77□□□□□ -0.53
CIITA-208ENST00000572665 PODNQ7Z5L7 613 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 USP48Q86UV5 1035 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 GJD3Q8N144 294 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 PI4KAP1Q8N8J0 262 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 FAM129BQ96TA1 746 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 MYH16Q9H6N6 1097 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 SEC31BQ9NQW1 1179 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 ZNF609O15014 1411 aa11.77□□□□□ -0.53
CIITA-208ENST00000572665 ANP32CO43423 234 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 IGHMBP2P38935 993 aaKnown RBP11.76□□□□□ -0.53
CIITA-208ENST00000572665 USP5P45974 858 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 MMP14P50281 582 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 HUNKP57058 714 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 PIK3R5Q8WYR1 880 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 CEP63Q96MT8 703 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 GBA2Q9HCG7 927 aaPredicted RBP11.76□□□□□ -0.53
CIITA-208ENST00000572665 BSDC1Q9NW68 430 aaPredicted RBP11.76□□□□□ -0.53
CIITA-208ENST00000572665 CUEDC1Q9NWM3 386 aaPredicted RBP11.76□□□□□ -0.53
CIITA-208ENST00000572665 RTL9Q8NET4 1388 aa11.76□□□□□ -0.53
CIITA-208ENST00000572665 IGHA2P01877 340 aa11.75□□□□□ -0.53
CIITA-208ENST00000572665 TRIM22Q8IYM9 498 aa11.75□□□□□ -0.53
CIITA-208ENST00000572665 TSR2Q969E8 191 aaKnown RBP11.75□□□□□ -0.53
CIITA-208ENST00000572665 ZCCHC2Q9C0B9 1178 aaKnown RBP11.75□□□□□ -0.53
CIITA-208ENST00000572665 NUCKS1Q9H1E3 243 aaKnown RBP11.75□□□□□ -0.53
CIITA-208ENST00000572665 MYO3BQ8WXR4 1341 aa11.75□□□□□ -0.53
CIITA-208ENST00000572665 SPEF2Q9C093 1822 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 SCN9AQ15858 1988 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 NEURL1BA8MQ27 555 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 H7C1W4 665 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 AOC2O75106 756 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 PCSK2P16519 638 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 UBAP2LQ14157 1087 aaKnown RBP11.74□□□□□ -0.53
CIITA-208ENST00000572665 DBN1Q16643 649 aa11.74□□□□□ -0.53
CIITA-208ENST00000572665 RGMBQ6NW40 437 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms