RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SPICE1Q8N0Z3 855 aa21.8■■□□□ 1.08
CHD3-214ENST00000572579 HTATIP2Q9BUP3 242 aa21.8■■□□□ 1.08
CHD3-214ENST00000572579 OGDHLQ9ULD0 1010 aa21.8■■□□□ 1.08
CHD3-214ENST00000572579 NAV1Q8NEY1 1877 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 TRIOBPQ9H2D6 2365 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 PTPREP23469 700 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 RGS2P41220 211 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 CHRDL2Q6WN34 429 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 NPLOC4Q8TAT6 608 aa21.79■■□□□ 1.08
CHD3-214ENST00000572579 RBM27Q9P2N5 1060 aaKnown RBP21.79■■□□□ 1.08
CHD3-214ENST00000572579 M0R2C6 588 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 RNF113AO15541 343 aaKnown RBP21.78■■□□□ 1.08
CHD3-214ENST00000572579 EEF2P13639 858 aaKnown RBP21.78■■□□□ 1.08
CHD3-214ENST00000572579 ZKSCAN1P17029 563 aaPredicted RBP21.78■■□□□ 1.08
CHD3-214ENST00000572579 ICA1Q05084 483 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 ZSCAN25Q6NSZ9 544 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 PI4K2BQ8TCG2 481 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 CCDC17Q96LX7 622 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 APBA2Q99767 749 aa21.78■■□□□ 1.08
CHD3-214ENST00000572579 MOV10L1Q9BXT6 1211 aaKnown RBP21.78■■□□□ 1.08
CHD3-214ENST00000572579 EPB41L4AQ9HCS5 686 aaPredicted RBP21.78■■□□□ 1.08
CHD3-214ENST00000572579 SLC15A5A6NIM6 579 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 DSG3P32926 999 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 RRP1P56182 461 aaKnown RBP21.77■■□□□ 1.08
CHD3-214ENST00000572579 GRB14Q14449 540 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 SBK1Q52WX2 424 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 CCAR1Q8IX12 1150 aaKnown RBP21.77■■□□□ 1.08
CHD3-214ENST00000572579 VCPKMTQ9H867 229 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 HOXC10Q9NYD6 342 aa21.77■■□□□ 1.08
CHD3-214ENST00000572579 HOXC6P09630 235 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 CAPN2P17655 700 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 CCNA1P78396 465 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 WDR78Q5VTH9 848 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 NECAB2Q7Z6G3 386 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 ANKLE1Q8NAG6 615 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 TRPV1Q8NER1 839 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 APPBP2Q92624 585 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 ATG4CQ96DT6 458 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 SEC62Q99442 399 aaKnown RBP21.76■■□□□ 1.07
CHD3-214ENST00000572579 TANGO6Q9C0B7 1094 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 PCDH10Q9P2E7 1040 aa21.76■■□□□ 1.07
CHD3-214ENST00000572579 LAMA3Q16787 3333 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 RASA1P20936 1047 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 TRMT44Q8IYL2 757 aaKnown RBP21.75■■□□□ 1.07
CHD3-214ENST00000572579 STK11IPQ8N1F8 1099 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 CRBNQ96SW2 442 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 SPATC1LQ9H0A9 340 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 FBXO28Q9NVF7 368 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 SALL3Q9BXA9 1300 aa21.75■■□□□ 1.07
CHD3-214ENST00000572579 EVI5O60447 810 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 COBLO75128 1261 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 ERCC3P19447 782 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 LPAR1Q92633 364 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 KANSL2Q9H9L4 492 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 ARHGEF10LQ9HCE6 1279 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 ADAMTS5Q9UNA0 930 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 RLFQ13129 1914 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 BAZ2AQ9UIF9 1905 aaKnown RBP21.74■■□□□ 1.07
CHD3-214ENST00000572579 PFASO15067 1338 aa21.74■■□□□ 1.07
CHD3-214ENST00000572579 GPAA1O43292 621 aa21.73■■□□□ 1.07
CHD3-214ENST00000572579 FLOT1O75955 427 aa21.73■■□□□ 1.07
CHD3-214ENST00000572579 GIMAP6Q6P9H5 292 aa21.73■■□□□ 1.07
CHD3-214ENST00000572579 NBPF3Q9H094 633 aa21.73■■□□□ 1.07
CHD3-214ENST00000572579 ARPP21Q9UBL0 812 aaPredicted RBP21.73■■□□□ 1.07
CHD3-214ENST00000572579 NR2E3Q9Y5X4 410 aa21.73■■□□□ 1.07
CHD3-214ENST00000572579 COL6A1P12109 1028 aa21.72■■□□□ 1.07
CHD3-214ENST00000572579 CYP2C19P33261 490 aa21.72■■□□□ 1.07
CHD3-214ENST00000572579 TMEM132BQ14DG7 1078 aa21.72■■□□□ 1.07
CHD3-214ENST00000572579 GPATCH3Q96I76 525 aa21.72■■□□□ 1.07
CHD3-214ENST00000572579 IGKV6D-41A0A0C4DH26 115 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 MINDY4BA8MYZ0 360 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 FOXP2O15409 715 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 GLRX3O76003 335 aaKnown RBP21.71■■□□□ 1.07
CHD3-214ENST00000572579 ADORA2AP29274 412 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 ATP2B2Q01814 1243 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 DDRGK1Q96HY6 314 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 C11orf49Q9H6J7 331 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 TTC41PQ6P2S7 1318 aa21.71■■□□□ 1.07
CHD3-214ENST00000572579 PATL2C9JE40 543 aaKnown RBP21.7■■□□□ 1.06
CHD3-214ENST00000572579 WDR46O15213 610 aaKnown RBP21.7■■□□□ 1.06
CHD3-214ENST00000572579 ZFYP08048 801 aaPredicted RBP21.7■■□□□ 1.06
CHD3-214ENST00000572579 AMOTL1Q8IY63 956 aa21.7■■□□□ 1.06
CHD3-214ENST00000572579 SHCBP1Q8NEM2 672 aa21.7■■□□□ 1.06
CHD3-214ENST00000572579 REPS2Q8NFH8 660 aa21.7■■□□□ 1.06
CHD3-214ENST00000572579 NUP88Q99567 741 aaPredicted RBP21.7■■□□□ 1.06
CHD3-214ENST00000572579 CWC22Q9HCG8 908 aaKnown RBP21.7■■□□□ 1.06
CHD3-214ENST00000572579 STAP2Q9UGK3 403 aa21.7■■□□□ 1.06
CHD3-214ENST00000572579 PRDM1O75626 825 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 ZMYM1Q5SVZ6 1142 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 SAMD1Q6SPF0 538 aaPredicted RBP21.69■■□□□ 1.06
CHD3-214ENST00000572579 IFNL3Q8IZI9 196 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 MB21D1Q8N884 522 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 IVNS1ABPQ9Y6Y0 642 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 ROBO3Q96MS0 1386 aa21.69■■□□□ 1.06
CHD3-214ENST00000572579 DNAH12Q6ZR08 3092 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 STRNO43815 780 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 PLS1Q14651 629 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 FAM83BQ5T0W9 1011 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 MFSD14CQ5VZR4 134 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 C7orf61Q8IZ16 206 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms