RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 MTIF3Q9H2K0 278 aaKnown RBP16.12■□□□□ 0.17
CCDC40-208ENST00000572270 PRKRIP1Q9H875 184 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-208ENST00000572270 RAI14Q9P0K7 980 aa16.12■□□□□ 0.17
CCDC40-208ENST00000572270 LRRC37A2A6NM11 1700 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 FAM86C2PA6NEL3 165 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 SPDYE16A6NNV3 312 aaPredicted RBP16.11■□□□□ 0.17
CCDC40-208ENST00000572270 ERC2O15083 957 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 PGK1P00558 417 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 VCAM1P19320 739 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 MRE11P49959 708 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 RASIP1Q5U651 963 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 ATF7IPQ6VMQ6 1270 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 TMEM199Q8N511 208 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 NUP133Q8WUM0 1156 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 HERVK_113Q902F9 699 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 STARD7Q9NQZ5 370 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 CHD7Q9P2D1 2997 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 MUC6Q6W4X9 2439 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 MROH7Q68CQ1 1323 aa16.11■□□□□ 0.17
CCDC40-208ENST00000572270 GH2P01242 217 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 HLA-DOAP06340 250 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 PLCG2P16885 1265 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 MVPQ14764 893 aaKnown RBP16.1■□□□□ 0.17
CCDC40-208ENST00000572270 METTL16Q86W50 562 aaKnown RBP16.1■□□□□ 0.17
CCDC40-208ENST00000572270 WDR63Q8IWG1 891 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 MOV10L1Q9BXT6 1211 aaKnown RBP16.1■□□□□ 0.17
CCDC40-208ENST00000572270 USP44Q9H0E7 712 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 NRBP1Q9UHY1 535 aa16.1■□□□□ 0.17
CCDC40-208ENST00000572270 COBLO75128 1261 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 BAG3O95817 575 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 ACRP10323 421 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 CSF2RAP15509 400 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 ZNF365Q70YC5 407 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 MAPKAPK5Q8IW41 473 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 TGFBRAP1Q8WUH2 860 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 MAML3Q96JK9 1138 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 RPAP3Q9H6T3 665 aaPredicted RBP16.09■□□□□ 0.17
CCDC40-208ENST00000572270 TBX21Q9UL17 535 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 FOCADQ5VW36 1801 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 FLT1P17948 1338 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 SMCHD1A6NHR9 2005 aa16.09■□□□□ 0.17
CCDC40-208ENST00000572270 CDK5RAP2Q96SN8 1893 aa16.08■□□□□ 0.17
CCDC40-208ENST00000572270 ERCC3P19447 782 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 TIMM10P62072 90 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 RAB3GAP1Q15042 981 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 PPP2R2DQ66LE6 453 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 C16orf59Q7L2K0 433 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 SHCBP1Q8NEM2 672 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 TSEN34Q9BSV6 310 aaKnown RBP16.08■□□□□ 0.16
CCDC40-208ENST00000572270 SPATC1LQ9H0A9 340 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 KIAA1683Q9H0B3 1180 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 C11orf16Q9NQ32 467 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 AATFQ9NY61 560 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC40-208ENST00000572270 PALD1Q9ULE6 856 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 COG5Q9UP83 839 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 ZNF521Q96K83 1311 aa16.08■□□□□ 0.16
CCDC40-208ENST00000572270 SMIM22K7EJ46 135 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 GTPBP6O43824 516 aaPredicted RBP16.07■□□□□ 0.16
CCDC40-208ENST00000572270 ACLYP53396 1101 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 TBC1D9Q6ZT07 1266 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 ABRAQ8N0Z2 381 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 XAGE2Q96GT9 111 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 LRP2BPQ9P2M1 347 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 YBX2Q9Y2T7 364 aaKnown RBP16.07■□□□□ 0.16
CCDC40-208ENST00000572270 ROBO3Q96MS0 1386 aa16.07■□□□□ 0.16
CCDC40-208ENST00000572270 PTPRCP08575 1304 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 A0A1B0GUL7 405 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 MOXD2PA6NHM9 499 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 AKR1A1P14550 325 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 NCAPG2Q86XI2 1143 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 SPATA5Q8NB90 893 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 PPP1R12CQ9BZL4 782 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 MROH8Q9H579 483 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 HMG20BQ9P0W2 317 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 AKAP2Q9Y2D5 859 aa16.06■□□□□ 0.16
CCDC40-208ENST00000572270 SALL2Q9Y467 1007 aaPredicted RBP16.06■□□□□ 0.16
CCDC40-208ENST00000572270 A0A0G2JMZ2 1700 aa16.05■□□□□ 0.16
CCDC40-208ENST00000572270 PLS1Q14651 629 aa16.05■□□□□ 0.16
CCDC40-208ENST00000572270 NAA16Q6N069 864 aaPredicted RBP16.05■□□□□ 0.16
CCDC40-208ENST00000572270 IL23AQ9NPF7 189 aa16.05■□□□□ 0.16
CCDC40-208ENST00000572270 HOXC10Q9NYD6 342 aa16.05■□□□□ 0.16
CCDC40-208ENST00000572270 SAP30BPQ9UHR5 308 aaKnown RBP16.05■□□□□ 0.16
CCDC40-208ENST00000572270 PA2G4Q9UQ80 394 aaKnown RBP16.05■□□□□ 0.16
CCDC40-208ENST00000572270 PRR33A8MZF0 331 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 TLR3O15455 904 aaKnown RBP16.04■□□□□ 0.16
CCDC40-208ENST00000572270 TLL1O43897 1013 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 ADAMTS4O75173 837 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 FGBP02675 491 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 FCER1AP12319 257 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 COG2Q14746 738 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 PI16Q6UXB8 463 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 MB21D1Q8N884 522 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC40-208ENST00000572270 GLT1D1Q96MS3 346 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 TANGO6Q9C0B7 1094 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 CABP5Q9NP86 173 aa16.04■□□□□ 0.16
CCDC40-208ENST00000572270 ZNFX1Q9P2E3 1918 aaKnown RBP16.04■□□□□ 0.16
CCDC40-208ENST00000572270 PI4K2BG5E9Z4 385 aa16.03■□□□□ 0.16
CCDC40-208ENST00000572270 UBTFL1P0CB47 393 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms