RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SNX27Q96L92 541 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 NOL10Q9BSC4 688 aaKnown RBP22.31■■□□□ 1.16
CLK3-227ENST00000570296 NRBP1Q9UHY1 535 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 GPR37L1O60883 481 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 PLCG2P16885 1265 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 MVPQ14764 893 aaKnown RBP22.3■■□□□ 1.16
CLK3-227ENST00000570296 ZYXQ15942 572 aaKnown RBP22.3■■□□□ 1.16
CLK3-227ENST00000570296 PRAMEF19Q5SWL8 479 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 C16orf59Q7L2K0 433 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 SHCBP1Q8NEM2 672 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 KIAA1683Q9H0B3 1180 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 RAI14Q9P0K7 980 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 TBX21Q9UL17 535 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 PTPRCP08575 1304 aa22.3■■□□□ 1.16
CLK3-227ENST00000570296 ROBO3Q96MS0 1386 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 COBLO75128 1261 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 GH2P01242 217 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 TIMM10P62072 90 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 TFF2Q03403 129 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 MOV10L1Q9BXT6 1211 aaKnown RBP22.29■■□□□ 1.16
CLK3-227ENST00000570296 FLT1P17948 1338 aa22.29■■□□□ 1.16
CLK3-227ENST00000570296 ERC2O15083 957 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 KCNQ1P51787 676 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 PSRC1Q6PGN9 363 aaPredicted RBP22.28■■□□□ 1.16
CLK3-227ENST00000570296 ATF7IPQ6VMQ6 1270 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 MAPKAPK5Q8IW41 473 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 ABRAQ8N0Z2 381 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 HERVK_113Q902F9 699 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 XAGE2Q96GT9 111 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 SLC28A3Q9HAS3 691 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 HMG20BQ9P0W2 317 aa22.28■■□□□ 1.16
CLK3-227ENST00000570296 ZNFX1Q9P2E3 1918 aaKnown RBP22.27■■□□□ 1.16
CLK3-227ENST00000570296 A0A0G2JMZ2 1700 aa22.27■■□□□ 1.16
CLK3-227ENST00000570296 BAG3O95817 575 aa22.27■■□□□ 1.16
CLK3-227ENST00000570296 TBC1D9Q6ZT07 1266 aa22.27■■□□□ 1.16
CLK3-227ENST00000570296 SPATA5Q8NB90 893 aa22.27■■□□□ 1.16
CLK3-227ENST00000570296 MAML3Q96JK9 1138 aa22.27■■□□□ 1.16
CLK3-227ENST00000570296 TSEN34Q9BSV6 310 aaKnown RBP22.27■■□□□ 1.16
CLK3-227ENST00000570296 PRRC2BQ5JSZ5 2229 aaKnown RBP22.26■■□□□ 1.15
CLK3-227ENST00000570296 A0A1B0GUL7 405 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 PGK1P00558 417 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 HLA-DOAP06340 250 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 ERCC3P19447 782 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 TGFBRAP1Q8WUH2 860 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 NUP133Q8WUM0 1156 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 SPATC1LQ9H0A9 340 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 NKX2-4Q9H2Z4 354 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 STARD7Q9NQZ5 370 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 PALD1Q9ULE6 856 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 AKAP2Q9Y2D5 859 aa22.26■■□□□ 1.15
CLK3-227ENST00000570296 TMEM199Q8N511 208 aa22.25■■□□□ 1.15
CLK3-227ENST00000570296 RPAP3Q9H6T3 665 aaPredicted RBP22.25■■□□□ 1.15
CLK3-227ENST00000570296 C11orf16Q9NQ32 467 aa22.25■■□□□ 1.15
CLK3-227ENST00000570296 COPRSQ9NQ92 184 aa22.25■■□□□ 1.15
CLK3-227ENST00000570296 AATFQ9NY61 560 aaKnown RBP eCLIP22.25■■□□□ 1.15
CLK3-227ENST00000570296 LRRC37A2A6NM11 1700 aa22.25■■□□□ 1.15
CLK3-227ENST00000570296 MROH7Q68CQ1 1323 aa22.25■■□□□ 1.15
CLK3-227ENST00000570296 PPP4CP60510 307 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 PI16Q6UXB8 463 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 ZNF365Q70YC5 407 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 MRPL50Q8N5N7 158 aaKnown RBP22.24■■□□□ 1.15
CLK3-227ENST00000570296 MTIF3Q9H2K0 278 aaKnown RBP22.24■■□□□ 1.15
CLK3-227ENST00000570296 MROH8Q9H579 483 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 HOXC10Q9NYD6 342 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 PA2G4Q9UQ80 394 aaKnown RBP22.24■■□□□ 1.15
CLK3-227ENST00000570296 ZNF521Q96K83 1311 aa22.24■■□□□ 1.15
CLK3-227ENST00000570296 CSF2RAP15509 400 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 ACLYP53396 1101 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 TATDN1Q6P1N9 297 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 MICALL1Q8N3F8 863 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 LRP2BPQ9P2M1 347 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 MYH1P12882 1939 aa22.23■■□□□ 1.15
CLK3-227ENST00000570296 MOXD2PA6NHM9 499 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 ADAMTS4O75173 837 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 COG2Q14746 738 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 RAB3GAP1Q15042 981 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 MB21D1Q8N884 522 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 ACER1Q8TDN7 264 aa22.22■■□□□ 1.15
CLK3-227ENST00000570296 YBX2Q9Y2T7 364 aaKnown RBP22.22■■□□□ 1.15
CLK3-227ENST00000570296 SALL2Q9Y467 1007 aaPredicted RBP22.22■■□□□ 1.15
CLK3-227ENST00000570296 UBTFL1P0CB47 393 aaPredicted RBP22.21■■□□□ 1.15
CLK3-227ENST00000570296 AKR1A1P14550 325 aa22.21■■□□□ 1.15
CLK3-227ENST00000570296 SKIV2LQ15477 1246 aaKnown RBP22.21■■□□□ 1.15
CLK3-227ENST00000570296 COG5Q9UP83 839 aa22.21■■□□□ 1.15
CLK3-227ENST00000570296 ACRP10323 421 aa22.2■■□□□ 1.14
CLK3-227ENST00000570296 ARID4AP29374 1257 aaPredicted RBP22.2■■□□□ 1.14
CLK3-227ENST00000570296 NAA16Q6N069 864 aaPredicted RBP22.2■■□□□ 1.14
CLK3-227ENST00000570296 SAP30BPQ9UHR5 308 aaKnown RBP22.2■■□□□ 1.14
CLK3-227ENST00000570296 TLL1O43897 1013 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 FCER1AP12319 257 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 POU3F3P20264 500 aaPredicted RBP22.19■■□□□ 1.14
CLK3-227ENST00000570296 MRE11P49959 708 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 TINF2Q9BSI4 451 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 IL23AQ9NPF7 189 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 ELP1O95163 1332 aa22.19■■□□□ 1.14
CLK3-227ENST00000570296 FAM86C2PA6NEL3 165 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 APBB1O00213 710 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 CDK7P50613 346 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 ABCB5Q2M3G0 1257 aa22.18■■□□□ 1.14
CLK3-227ENST00000570296 GORABQ5T7V8 394 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms