RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 C8orf76Q96K31 380 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 ZNF396Q96N95 335 aaPredicted RBP9.26□□□□□ -0.93
VPS39-213ENST00000570062 RNF26Q9BY78 433 aaPredicted RBP9.26□□□□□ -0.93
VPS39-213ENST00000570062 KAT14Q9H8E8 782 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 SPON1Q9HCB6 807 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 PI4KBQ9UBF8 816 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 BRPF3Q9ULD4 1205 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 MAST2Q6P0Q8 1798 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 TIAM2Q8IVF5 1701 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 SNED1Q8TER0 1413 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 SPDYE16A6NNV3 312 aaPredicted RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 LETM1O95202 739 aaPredicted RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 DEXIO95424 95 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 FMNL1O95466 1100 aaPredicted RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 USP17L8P0C7I0 530 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 RBM5P52756 815 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS39-213ENST00000570062 ST3GAL1Q11201 340 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 APOBEC3HQ6NTF7 200 aaKnown RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 CDC42EP5Q6NZY7 148 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 MAPKAPK5Q8IW41 473 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 CERS5Q8N5B7 392 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 ENAHQ8N8S7 591 aaPredicted RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 FBXO18Q8NFZ0 1043 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 TRIM34Q9BYJ4 488 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 PDGFDQ9GZP0 370 aaPredicted RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 SERPINB13Q9UIV8 391 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 SYNPO2Q9UMS6 1093 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 DDX49Q9Y6V7 483 aaKnown RBP9.25□□□□□ -0.93
VPS39-213ENST00000570062 ELP1O95163 1332 aa9.25□□□□□ -0.93
VPS39-213ENST00000570062 F8W031 263 aaPredicted RBP9.24□□□□□ -0.93
VPS39-213ENST00000570062 CTDNEP1O95476 244 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 CDK8P49336 464 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 UBE2HP62256 183 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 PKP1Q13835 747 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 DLGAP5Q15398 846 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 GRIK5Q16478 980 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 OLFM4Q6UX06 510 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 MICU3Q86XE3 530 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 KIAA0825Q8IV33 1275 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 CRACR2BQ8N4Y2 399 aaPredicted RBP9.24□□□□□ -0.93
VPS39-213ENST00000570062 DDX11Q96FC9 970 aa9.24□□□□□ -0.93
VPS39-213ENST00000570062 OSBPL5Q9H0X9 879 aaPredicted RBP9.24□□□□□ -0.93
VPS39-213ENST00000570062 RTN4Q9NQC3 1192 aaKnown RBP9.24□□□□□ -0.93
VPS39-213ENST00000570062 TAF1P21675 1872 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 CASZ1Q86V15 1759 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 GOLGA6L4A6NEF3 574 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 PRPF3O43395 683 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 JAK2O60674 1132 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 PRPF40AO75400 957 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 WDHD1O75717 1129 aaPredicted RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 TOP1P11387 765 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 ADD1P35611 737 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 NOVP48745 357 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 TNNI2P48788 182 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 EIF6P56537 245 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 TROAPQ12815 778 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 CIAPIN1Q6FI81 312 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 GALNT17Q6IS24 598 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 NUP133Q8WUM0 1156 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 DPF2Q92785 391 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 HOOK2Q96ED9 719 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 BRMS1Q9HCU9 246 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 LMBRD1Q9NUN5 540 aa9.23□□□□□ -0.93
VPS39-213ENST00000570062 HERC5Q9UII4 1024 aaKnown RBP9.23□□□□□ -0.93
VPS39-213ENST00000570062 KIAA1551Q9HCM1 1747 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 COL2A1P02458 1487 aaPredicted RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 CCDC88AQ3V6T2 1871 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 RASA1P20936 1047 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 SCNN1DP51172 638 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 PLCD1P51178 756 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 GABPAQ06546 454 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 GNL2Q13823 731 aaKnown RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 TNFAIP1Q13829 316 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 NTRK3Q16288 839 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 CFAP100Q494V2 611 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 RCSD1Q6JBY9 416 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 FAM83AQ86UY5 434 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 METTL16Q86W50 562 aaKnown RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 PNMA1Q8ND90 353 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 CCDC12Q8WUD4 166 aaPredicted RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 GMLQ99445 158 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 ZKSCAN3Q9BRR0 538 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 ALG1Q9BT22 464 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 NCOA5Q9HCD5 579 aaKnown RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 INCENPQ9NQS7 918 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 ZNF277Q9NRM2 450 aaPredicted RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 GINM1Q9NU53 330 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 SAP30BPQ9UHR5 308 aaKnown RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 PLIN4Q96Q06 1357 aa9.22□□□□□ -0.93
VPS39-213ENST00000570062 COL11A2P13942 1736 aaPredicted RBP9.22□□□□□ -0.93
VPS39-213ENST00000570062 CYP2D7A0A087X1C5 515 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 YDJCA8MPS7 323 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 hCG_1984214I3L0E3 225 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 PRDM1O75626 825 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 TTLL1O95922 423 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 CYP2D6P10635 497 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 FDPSP14324 419 aaKnown RBP9.21□□□□□ -0.94
VPS39-213ENST00000570062 CALML3P27482 149 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 PRELPP51888 382 aa9.21□□□□□ -0.94
VPS39-213ENST00000570062 PRSS12P56730 875 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms