RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TGFB3P10600 412 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 ADD1P35611 737 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 ITGAEP38570 1179 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 HTR3AP46098 478 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 CRKP46108 304 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 POU5F1Q01860 360 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 PTK2Q05397 1052 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 HDAC1Q13547 482 aaPredicted RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 DDR2Q16832 855 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 AKAP4Q5JQC9 854 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 INTS6LQ5JSJ4 861 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 WDR78Q5VTH9 848 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 ALKBH2Q6NS38 261 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 SPATC1Q76KD6 591 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 ZNF295-AS1Q8N0V1 137 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 SMC1BQ8NDV3 1235 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 MYRIPQ8NFW9 859 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 EPS8L3Q8TE67 593 aaKnown RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 BTBD6Q96KE9 485 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 RHOVQ96L33 236 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 C2orf49Q9BVC5 232 aaPredicted RBP3.79□□□□□ -1.8
VPS35-209ENST00000568642 NT5C1AQ9BXI3 368 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 PPCSQ9HAB8 311 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 LGR6Q9HBX8 967 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 OSGEPQ9NPF4 335 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 ZIM2Q9NZV7 527 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 LUZP4Q9P127 313 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 GGA1Q9UJY5 639 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 DYRK1BQ9Y463 629 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 CACNA1BQ00975 2339 aa3.79□□□□□ -1.8
VPS35-209ENST00000568642 PIK3C2BO00750 1634 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 A6NHS1 94 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 ALG1L2C9J202 215 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 PRRT4C9JH25 899 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 ABLIM3O94929 683 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 ASMTLO95671 621 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 PGRP06401 933 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 TRIM27P14373 513 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 PTGIRP43119 386 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 SCTRP47872 440 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 RNF144AP50876 292 aaPredicted RBP3.78□□□□□ -1.8
VPS35-209ENST00000568642 CASP7P55210 303 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 GPSM2P81274 684 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 MTMR1Q13613 665 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 CBX2Q14781 532 aaPredicted RBP3.78□□□□□ -1.8
VPS35-209ENST00000568642 FAM102BQ5T8I3 360 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 PCNX4Q63HM2 1172 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 FBXL19Q6PCT2 694 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 IGF2-ASQ6U949 168 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 DGKHQ86XP1 1220 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 KIAA0825Q8IV33 1275 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 STAG2Q8N3U4 1231 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 GOLGA6L1Q8N7Z2 621 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 UBR7Q8N806 425 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 THAP3Q8WTV1 239 aaPredicted RBP3.78□□□□□ -1.8
VPS35-209ENST00000568642 TRIM11Q96F44 468 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 KCTD15Q96SI1 283 aaPredicted RBP3.78□□□□□ -1.8
VPS35-209ENST00000568642 MCOLN1Q9GZU1 580 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 NUCKS1Q9H1E3 243 aaKnown RBP3.78□□□□□ -1.8
VPS35-209ENST00000568642 DNAJC25Q9H1X3 360 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 TNKS2Q9H2K2 1166 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 AS3MTQ9HBK9 375 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 SAGE1Q9NXZ1 904 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 STK32BQ9NY57 414 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 CLIC5Q9NZA1 410 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 RAPGEFL1Q9UHV5 662 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 STRIP2Q9ULQ0 834 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 SPG7Q9UQ90 795 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 USP3Q9Y6I4 520 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 PKD1L3Q7Z443 1732 aa3.78□□□□□ -1.8
VPS35-209ENST00000568642 TMEM2Q9UHN6 1383 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 VCANP13611 3396 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 F6X3S4 739 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 C2CD2LO14523 706 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 LILRA1O75019 489 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 EPXP11678 715 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 POLD1P28340 1107 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 ECE1P42892 770 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 NEK2P51955 445 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 ZRSR2Q15696 482 aaKnown RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 GRAMD1BQ3KR37 738 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 CCDC93Q567U6 631 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 SLCO4C1Q6ZQN7 724 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 GET4Q7L5D6 327 aaPredicted RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 SUGP1Q8IWZ8 645 aaKnown RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 TTC30BQ8N4P2 665 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 MAGEB6Q8N7X4 407 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 C3orf58Q8NDZ4 430 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 ZNF296Q8WUU4 475 aaPredicted RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 GPKOWQ92917 476 aaPredicted RBP eCLIP3.77□□□□□ -1.81
VPS35-209ENST00000568642 NINJ1Q92982 152 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 PLD4Q96BZ4 506 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 SLC4A9Q96Q91 983 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 NOC4LQ9BVI4 516 aaKnown RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 TRIM55Q9BYV6 548 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 RHOBTB2Q9BYZ6 727 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 TMX4Q9H1E5 349 aaPredicted RBP3.77□□□□□ -1.81
VPS35-209ENST00000568642 ST7Q9NRC1 585 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 GTF2IRD1Q9UHL9 959 aa3.77□□□□□ -1.81
VPS35-209ENST00000568642 HCN4Q9Y3Q4 1203 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms