RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF165P49910 485 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 HK2P52789 917 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 DUSP4Q13115 394 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 TMEM87AQ8NBN3 555 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 BAHD1Q8TBE0 780 aaPredicted RBP5.04□□□□□ -1.6
VPS35-207ENST00000568191 PPP1R13LQ8WUF5 828 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 ZNF296Q8WUU4 475 aaPredicted RBP5.04□□□□□ -1.6
VPS35-207ENST00000568191 LIN37Q96GY3 246 aaPredicted RBP5.04□□□□□ -1.6
VPS35-207ENST00000568191 KIF2CQ99661 725 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 GMIPQ9P107 970 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 PCDHB14Q9Y5E9 798 aa5.04□□□□□ -1.6
VPS35-207ENST00000568191 DNAJC25-GNG10A0A024R161 153 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 FITM1A5D6W6 292 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 ZNF503-AS2A6NEH8 195 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 SRFP11831 508 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 CCNFP41002 786 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 CHRNEQ04844 493 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 APOBRQ0VD83 1088 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 GAB4Q2WGN9 574 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 ARSHQ5FYA8 562 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 FYB2Q5VWT5 728 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 FBXL19Q6PCT2 694 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 LILRA2Q8N149 483 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 REXO1Q8N1G1 1221 aaKnown RBP5.03□□□□□ -1.6
VPS35-207ENST00000568191 FBXO15Q8NCQ5 510 aaPredicted RBP5.03□□□□□ -1.6
VPS35-207ENST00000568191 PDZD8Q8NEN9 1154 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 BRMS1Q9HCU9 246 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 KCNQ5Q9NR82 932 aa5.03□□□□□ -1.6
VPS35-207ENST00000568191 POLR3KQ9Y2Y1 108 aaPredicted RBP5.03□□□□□ -1.6
VPS35-207ENST00000568191 SLC22A31A6NKX4 558 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 NFIBO00712 420 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 GREM1O60565 184 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 ATE1O95260 518 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 TMEM253P0C7T8 217 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 SEZ6Q53EL9 994 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 ANKLE2Q86XL3 938 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 FBXO27Q8NI29 283 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 NKD1Q969G9 470 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 TOX2Q96NM4 488 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 ADAMTS10Q9H324 1103 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 NSUN3Q9H649 340 aaKnown RBP5.02□□□□□ -1.61
VPS35-207ENST00000568191 DCP1AQ9NPI6 582 aaPredicted RBP5.02□□□□□ -1.61
VPS35-207ENST00000568191 COPRSQ9NQ92 184 aa5.02□□□□□ -1.61
VPS35-207ENST00000568191 RBM47A0AV96 593 aaKnown RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 CLEC3AO75596 197 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 HPXP02790 462 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 ENDOUP21128 410 aaKnown RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 GARTP22102 1010 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 ZNF76P36508 570 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 PCBP3P57721 371 aaKnown RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 NMIQ13287 307 aaPredicted RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 MRPL58Q14197 206 aaKnown RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 SNX17Q15036 470 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 ZNF124Q15973 351 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 RALGPS1Q5JS13 557 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 RNF111Q6ZNA4 994 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 PRR23BQ6ZRT6 265 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 SYDE1Q6ZW31 735 aaPredicted RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 KIAA0825Q8IV33 1275 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 ZSCAN18Q8TBC5 510 aaPredicted RBP5.01□□□□□ -1.61
VPS35-207ENST00000568191 DHRS1Q96LJ7 313 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 SPON2Q9BUD6 331 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 SLC6A17Q9H1V8 727 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 EPB41L4BQ9H329 900 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 EHMT1Q9H9B1 1298 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 C19orf73Q9NVV2 129 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 PCDHA11Q9Y5I1 949 aa5.01□□□□□ -1.61
VPS35-207ENST00000568191 LRRN2O75325 713 aa5□□□□□ -1.61
VPS35-207ENST00000568191 IMPDH2P12268 514 aa5□□□□□ -1.61
VPS35-207ENST00000568191 MESP2Q0VG99 397 aa5□□□□□ -1.61
VPS35-207ENST00000568191 CDCP2Q5VXM1 449 aa5□□□□□ -1.61
VPS35-207ENST00000568191 GK5Q6ZS86 529 aa5□□□□□ -1.61
VPS35-207ENST00000568191 NLRC3Q7RTR2 1065 aa5□□□□□ -1.61
VPS35-207ENST00000568191 ZNF655Q8N720 491 aaPredicted RBP5□□□□□ -1.61
VPS35-207ENST00000568191 ANKS4BQ8N8V4 417 aa5□□□□□ -1.61
VPS35-207ENST00000568191 DAGLBQ8NCG7 672 aa5□□□□□ -1.61
VPS35-207ENST00000568191 SYTL5Q8TDW5 730 aaPredicted RBP5□□□□□ -1.61
VPS35-207ENST00000568191 SLC26A8Q96RN1 970 aa5□□□□□ -1.61
VPS35-207ENST00000568191 DIRC2Q96SL1 478 aa5□□□□□ -1.61
VPS35-207ENST00000568191 NT5C1AQ9BXI3 368 aa5□□□□□ -1.61
VPS35-207ENST00000568191 KRTAP4-7Q9BYR0 210 aa5□□□□□ -1.61
VPS35-207ENST00000568191 CWC22Q9HCG8 908 aaKnown RBP5□□□□□ -1.61
VPS35-207ENST00000568191 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5□□□□□ -1.61
VPS35-207ENST00000568191 ZMYM5Q9UJ78 669 aa5□□□□□ -1.61
VPS35-207ENST00000568191 ARID1BQ8NFD5 2236 aaPredicted RBP5□□□□□ -1.61
VPS35-207ENST00000568191 WASH4PA8MWX3 477 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 TSPAN15O95858 294 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 ZGLP1P0C6A0 271 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 RPL10P27635 214 aaKnown RBP4.99□□□□□ -1.61
VPS35-207ENST00000568191 JAG1P78504 1218 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 NR0B2Q15466 257 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 SLC14A2Q15849 920 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 LCE1DQ5T752 114 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 CNNM2Q9H8M5 875 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 METTL5Q9NRN9 209 aaKnown RBP4.99□□□□□ -1.61
VPS35-207ENST00000568191 UBP1Q9NZI7 540 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 ADAMTS1Q9UHI8 967 aa4.99□□□□□ -1.61
VPS35-207ENST00000568191 ZNF16P17020 682 aaPredicted RBP4.98□□□□□ -1.61
VPS35-207ENST00000568191 NBPF12Q5TAG4 269 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms