RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SMCR8Q8TEV9 937 aaPredicted RBP11.63□□□□□ -0.55
CLK3-220ENST00000567992 RUFY2Q8WXA3 655 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 P2RX7Q99572 595 aaKnown RBP11.63□□□□□ -0.55
CLK3-220ENST00000567992 RPAP3Q9H6T3 665 aaPredicted RBP11.63□□□□□ -0.55
CLK3-220ENST00000567992 SH2D4AQ9H788 454 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 TXNRD2Q9NNW7 524 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 MTMR4Q9NYA4 1195 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 COL11A1P12107 1806 aaPredicted RBP11.63□□□□□ -0.55
CLK3-220ENST00000567992 USP17L15C9J2P7 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L13C9JLJ4 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L11C9JVI0 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L18D6R9N7 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L22D6RA61 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L17D6RBQ6 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L19D6RCP7 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L20D6RJB6 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 NMT2O60551 498 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 CNMDO75829 334 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 TSPY3P0CV98 308 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 TSPY8P0CW00 308 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 IRX3P78415 501 aaPredicted RBP11.62□□□□□ -0.55
CLK3-220ENST00000567992 USP17L24Q0WX57 530 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 FAM110CQ1W6H9 321 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 SPICE1Q8N0Z3 855 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 ANKRD13CQ8N6S4 541 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 LPAR1Q92633 364 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 MKL1Q969V6 931 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 ESYT1Q9BSJ8 1104 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 MORF4L1Q9UBU8 362 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 GTF3C3Q9Y5Q9 886 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 TAF6LQ9Y6J9 622 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 BRCA2P51587 3418 aa11.62□□□□□ -0.55
CLK3-220ENST00000567992 SPDYE16A6NNV3 312 aaPredicted RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 ZNF213O14771 459 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 WDR46O15213 610 aaKnown RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 RANBP6O60518 1105 aaKnown RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 TTLL1O95922 423 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 PCP11498 1178 aaKnown RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 GCLCP48506 637 aaPredicted RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 ATP2B2Q01814 1243 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 LBX2Q6XYB7 198 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 LRRC47Q8N1G4 583 aaKnown RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 MAP4K1Q92918 833 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 TRIM47Q96LD4 638 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 LSG1Q9H089 658 aaKnown RBP11.61□□□□□ -0.55
CLK3-220ENST00000567992 EFCC1Q9HA90 598 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 RBPJLQ9UBG7 517 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 SYNPO2Q9UMS6 1093 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 TRIM17Q9Y577 477 aa11.61□□□□□ -0.55
CLK3-220ENST00000567992 DOCK3Q8IZD9 2030 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 TSPY2A6NKD2 308 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 CDC45O75419 566 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 NDUFB10O96000 172 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 CYP21A2P08686 494 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 IMMTQ16891 758 aaKnown RBP11.6□□□□□ -0.55
CLK3-220ENST00000567992 RRP12Q5JTH9 1297 aaKnown RBP11.6□□□□□ -0.55
CLK3-220ENST00000567992 FBXO46Q6PJ61 603 aaPredicted RBP11.6□□□□□ -0.55
CLK3-220ENST00000567992 MFSD6Q6ZSS7 791 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 RASGRP2Q7LDG7 609 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 GMCL1P1Q8NEA9 526 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 ABHD8Q96I13 439 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 TANGO6Q9C0B7 1094 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 RNF41Q9H4P4 317 aaPredicted RBP11.6□□□□□ -0.55
CLK3-220ENST00000567992 GOPCQ9HD26 462 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 TCP11L1Q9NUJ3 509 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 CLIP2Q9UDT6 1046 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 CTNNA3Q9UI47 895 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 PTPN22Q9Y2R2 807 aa11.6□□□□□ -0.55
CLK3-220ENST00000567992 F5H6K3 240 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 ECM2O94769 699 aaPredicted RBP11.59□□□□□ -0.55
CLK3-220ENST00000567992 PSMC4P43686 418 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 KLRC3Q07444 240 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 PKN2Q16513 984 aaKnown RBP11.59□□□□□ -0.55
CLK3-220ENST00000567992 FAM83BQ5T0W9 1011 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 RCSD1Q6JBY9 416 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 STOX1Q6ZVD7 989 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 GTF3C2Q8WUA4 911 aaPredicted RBP11.59□□□□□ -0.55
CLK3-220ENST00000567992 NUP88Q99567 741 aaPredicted RBP11.59□□□□□ -0.55
CLK3-220ENST00000567992 FBXO28Q9NVF7 368 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 BTBD7Q9P203 1132 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 U3KPZ7 1027 aaPredicted RBP11.59□□□□□ -0.55
CLK3-220ENST00000567992 MYPNQ86TC9 1320 aa11.59□□□□□ -0.55
CLK3-220ENST00000567992 ZNF236Q9UL36 1845 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 B4E1Z4 1266 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 KDM4AO75164 1064 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 GNRH1P01148 92 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 DSG3P32926 999 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 NT5C2P49902 561 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 FCGRTP55899 365 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 ERVK-9P63128 1117 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 ERVK-24P63145 666 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 COG2Q14746 738 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 KIF22Q14807 665 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 Q3C1V9 767 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 TOMM22Q9NS69 142 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 ADAMTS5Q9UNA0 930 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 STX8Q9UNK0 236 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 HPS5Q9UPZ3 1129 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 RABGAP1Q9Y3P9 1069 aa11.58□□□□□ -0.56
CLK3-220ENST00000567992 RBM8AQ9Y5S9 174 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms