RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 NTRK3Q16288 839 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 IFIT1BQ5T764 474 aaKnown RBP16.96■□□□□ 0.31
COMMD4-221ENST00000567935 BRAPQ7Z569 592 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 FBXO18Q8NFZ0 1043 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 NKX2-3Q8TAU0 364 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 CD99L2Q8TCZ2 262 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 GPT2Q8TD30 523 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 TGFBRAP1Q8WUH2 860 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 ZNF396Q96N95 335 aaPredicted RBP16.96■□□□□ 0.31
COMMD4-221ENST00000567935 DAGLAQ9Y4D2 1042 aa16.96■□□□□ 0.31
COMMD4-221ENST00000567935 CYP2D7A0A087X1C5 515 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FIBPO43427 364 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FMNL1O95466 1100 aaPredicted RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 USP17L8P0C7I0 530 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ADD1P35611 737 aaKnown RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ZNF280AP59817 542 aaPredicted RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ZNF445P59923 1031 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 CAP1Q01518 475 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 SSRP1Q08945 709 aaKnown RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FERMT3Q86UX7 667 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ENAHQ8N8S7 591 aaPredicted RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FANCBQ8NB91 859 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ANKS1AQ92625 1134 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 TEKT1Q969V4 418 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 ZNF333Q96JL9 665 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 MAP3K14Q99558 947 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 TMEM106CQ9BVX2 250 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 GZF1Q9H116 711 aaPredicted RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 TCP11L1Q9NUJ3 509 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 TTF2Q9UNY4 1162 aaKnown RBP16.95■□□□□ 0.3
COMMD4-221ENST00000567935 MYH15Q9Y2K3 1946 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FLT1P17948 1338 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 PITPNM2Q9BZ72 1349 aa16.95■□□□□ 0.3
COMMD4-221ENST00000567935 FSD2A1L4K1 749 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 TSPY2A6NKD2 308 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 CDC27P30260 824 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 TRIM29Q14134 588 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 CAVIN1Q6NZI2 390 aaKnown RBP16.94■□□□□ 0.3
COMMD4-221ENST00000567935 DGKHQ86XP1 1220 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 CERS5Q8N5B7 392 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 FBXW7Q969H0 707 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 SENP2Q9HC62 589 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 FAM217BQ9NTX9 383 aaPredicted RBP16.94■□□□□ 0.3
COMMD4-221ENST00000567935 MYH1P12882 1939 aa16.94■□□□□ 0.3
COMMD4-221ENST00000567935 USP17L3A6NCW0 530 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 USP17L4A6NCW7 530 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 ALDH1A1P00352 501 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 CYP2D6P10635 497 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 FOXD4L6Q3SYB3 417 aaPredicted RBP16.93■□□□□ 0.3
COMMD4-221ENST00000567935 FOXD4L3Q6VB84 417 aaPredicted RBP16.93■□□□□ 0.3
COMMD4-221ENST00000567935 C16orf86Q6ZW13 317 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 USP17L1Q7RTZ2 530 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 TTC6Q86TZ1 520 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 MAPKAPK5Q8IW41 473 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 ZNF444Q8N0Y2 327 aaPredicted RBP16.93■□□□□ 0.3
COMMD4-221ENST00000567935 CHAMP1Q96JM3 812 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 ZKSCAN3Q9BRR0 538 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 ALG1Q9BT22 464 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 MYO3BQ8WXR4 1341 aa16.93■□□□□ 0.3
COMMD4-221ENST00000567935 NPM3O75607 178 aaKnown RBP16.92■□□□□ 0.3
COMMD4-221ENST00000567935 PRDM1O75626 825 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 LETM1O95202 739 aaPredicted RBP16.92■□□□□ 0.3
COMMD4-221ENST00000567935 DEXIO95424 95 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 DACT2Q5SW24 774 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 SPRYD7Q5W111 196 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 IFNL1Q8IU54 200 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 STK11IPQ8N1F8 1099 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 ERO1AQ96HE7 468 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 SPATA32Q96LK8 384 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 ZDHHC15Q96MV8 337 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 RNF26Q9BY78 433 aaPredicted RBP16.92■□□□□ 0.3
COMMD4-221ENST00000567935 GDPD2Q9HCC8 539 aa16.92■□□□□ 0.3
COMMD4-221ENST00000567935 PSME4Q14997 1843 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 IGF2BP3O00425 579 aaKnown RBP eCLIP16.91■□□□□ 0.3
COMMD4-221ENST00000567935 KIF5BP33176 963 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 MRE11P49959 708 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 ZSCAN23Q3MJ62 389 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 RAB11FIP4Q86YS3 637 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 CRACR2BQ8N4Y2 399 aaPredicted RBP16.91■□□□□ 0.3
COMMD4-221ENST00000567935 CTCFLQ8NI51 663 aaPredicted RBP16.91■□□□□ 0.3
COMMD4-221ENST00000567935 NUP133Q8WUM0 1156 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 PRO3102Q9H379 93 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 EFCC1Q9HA90 598 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 MYOZ2Q9NPC6 264 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 SERPINA10Q9UK55 444 aa16.91■□□□□ 0.3
COMMD4-221ENST00000567935 GOLGA6L4A6NEF3 574 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 DTNBO60941 627 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 XBP1P17861 261 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 RXRAP19793 462 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 CRKP46108 304 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 TFAP4Q01664 338 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 AKAP17AQ02040 695 aaKnown RBP16.9■□□□□ 0.3
COMMD4-221ENST00000567935 TROAPQ12815 778 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 PRKG1Q13976 671 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 RSBN1LQ6PCB5 846 aaPredicted RBP16.9■□□□□ 0.3
COMMD4-221ENST00000567935 LEO1Q8WVC0 666 aaPredicted RBP16.9■□□□□ 0.3
COMMD4-221ENST00000567935 MYL10Q9BUA6 226 aa16.9■□□□□ 0.3
COMMD4-221ENST00000567935 SLC26A6Q9BXS9 759 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms