RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 USP44Q9H0E7 712 aa20.61■□□□□ 0.89
CLK3-217ENST00000566126 DHX36Q9H2U1 1008 aaKnown RBP20.61■□□□□ 0.89
CLK3-217ENST00000566126 SLC28A3Q9HAS3 691 aa20.61■□□□□ 0.89
CLK3-217ENST00000566126 WDFY4Q6ZS81 3184 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 FOCADQ5VW36 1801 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 DCDC2CA8MYV0 355 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 STRNO43815 780 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 LDHCP07864 332 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 ACRP10323 421 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 CSF2RAP15509 400 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 VCAM1P19320 739 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 RNF180Q86T96 592 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 HERVK_113Q902F9 699 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 MOV10L1Q9BXT6 1211 aaKnown RBP20.6■□□□□ 0.89
CLK3-217ENST00000566126 FBXO3Q9UK99 471 aa20.6■□□□□ 0.89
CLK3-217ENST00000566126 ZNFX1Q9P2E3 1918 aaKnown RBP20.6■□□□□ 0.89
CLK3-217ENST00000566126 SMIM22K7EJ46 135 aa20.59■□□□□ 0.89
CLK3-217ENST00000566126 RARBP10826 455 aa20.59■□□□□ 0.89
CLK3-217ENST00000566126 DDX10Q13206 875 aaKnown RBP20.59■□□□□ 0.89
CLK3-217ENST00000566126 CCDC174Q6PII3 467 aa20.59■□□□□ 0.89
CLK3-217ENST00000566126 FOXP4Q8IVH2 680 aaPredicted RBP20.59■□□□□ 0.89
CLK3-217ENST00000566126 GSTO1P78417 241 aa20.58■□□□□ 0.89
CLK3-217ENST00000566126 SKIV2LQ15477 1246 aaKnown RBP20.58■□□□□ 0.89
CLK3-217ENST00000566126 PSRC1Q6PGN9 363 aaPredicted RBP20.58■□□□□ 0.89
CLK3-217ENST00000566126 MAML3Q96JK9 1138 aa20.58■□□□□ 0.89
CLK3-217ENST00000566126 FEZ1Q99689 392 aa20.58■□□□□ 0.89
CLK3-217ENST00000566126 A0A0G2JMZ2 1700 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 PI4K2BG5E9Z4 385 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 GH2P01242 217 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 TIMM10P62072 90 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 TBC1D9Q6ZT07 1266 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 CRACR2BQ8N4Y2 399 aaPredicted RBP20.57■□□□□ 0.88
CLK3-217ENST00000566126 PRKRIP1Q9H875 184 aaPredicted RBP20.57■□□□□ 0.88
CLK3-217ENST00000566126 STARD7Q9NQZ5 370 aa20.57■□□□□ 0.88
CLK3-217ENST00000566126 ADAMTS4O75173 837 aa20.56■□□□□ 0.88
CLK3-217ENST00000566126 ERCC3P19447 782 aa20.56■□□□□ 0.88
CLK3-217ENST00000566126 MAPKAPK5Q8IW41 473 aa20.56■□□□□ 0.88
CLK3-217ENST00000566126 PALD1Q9ULE6 856 aa20.56■□□□□ 0.88
CLK3-217ENST00000566126 ZNF521Q96K83 1311 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 ACLYP53396 1101 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 PI16Q6UXB8 463 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 TMEM199Q8N511 208 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 SHCBP1Q8NEM2 672 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 ACER1Q8TDN7 264 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 LENG1Q96BZ8 264 aaPredicted RBP20.55■□□□□ 0.88
CLK3-217ENST00000566126 TSEN34Q9BSV6 310 aaKnown RBP20.55■□□□□ 0.88
CLK3-217ENST00000566126 TRIM34Q9BYJ4 488 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 KIAA1683Q9H0B3 1180 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 RPAP3Q9H6T3 665 aaPredicted RBP20.55■□□□□ 0.88
CLK3-217ENST00000566126 CD320Q9NPF0 282 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 SLC5A4Q9NY91 659 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 HMG20BQ9P0W2 317 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 NRBP1Q9UHY1 535 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 ROBO3Q96MS0 1386 aa20.55■□□□□ 0.88
CLK3-217ENST00000566126 FLT1P17948 1338 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 TAL1P17542 331 aaPredicted RBP20.54■□□□□ 0.88
CLK3-217ENST00000566126 IL15P40933 162 aaPredicted RBP20.54■□□□□ 0.88
CLK3-217ENST00000566126 USP14P54578 494 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 NHLH1Q02575 133 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 TGFBRAP1Q8WUH2 860 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 SPATC1LQ9H0A9 340 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 RAI14Q9P0K7 980 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 COG5Q9UP83 839 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 MTCH2Q9Y6C9 303 aa20.54■□□□□ 0.88
CLK3-217ENST00000566126 PRR33A8MZF0 331 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 MYOGP15173 224 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 POU3F3P20264 500 aaPredicted RBP20.53■□□□□ 0.88
CLK3-217ENST00000566126 RABGGTBP53611 331 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 PPP2R2DQ66LE6 453 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 WDR63Q8IWG1 891 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 ABRAQ8N0Z2 381 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 XAGE2Q96GT9 111 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 IL23AQ9NPF7 189 aa20.53■□□□□ 0.88
CLK3-217ENST00000566126 AATFQ9NY61 560 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLK3-217ENST00000566126 PA2G4Q9UQ80 394 aaKnown RBP20.53■□□□□ 0.88
CLK3-217ENST00000566126 RFXAPO00287 272 aa20.52■□□□□ 0.88
CLK3-217ENST00000566126 CDK7P50613 346 aa20.52■□□□□ 0.88
CLK3-217ENST00000566126 NUP133Q8WUM0 1156 aa20.52■□□□□ 0.88
CLK3-217ENST00000566126 PPP1R12CQ9BZL4 782 aa20.52■□□□□ 0.88
CLK3-217ENST00000566126 ZNF865P0CJ78 1059 aaPredicted RBP20.51■□□□□ 0.87
CLK3-217ENST00000566126 CCSAPQ6IQ19 270 aaPredicted RBP20.51■□□□□ 0.87
CLK3-217ENST00000566126 KLHDC9Q8NEP7 349 aa20.51■□□□□ 0.87
CLK3-217ENST00000566126 CACNA1AO00555 2505 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 A0A1B0GUL7 405 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 MOXD2PA6NHM9 499 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 APBB1O00213 710 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 KRT40Q6A162 431 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 TATDN1Q6P1N9 297 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 SPATA5Q8NB90 893 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 MROH8Q9H579 483 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 SAP30BPQ9UHR5 308 aaKnown RBP20.5■□□□□ 0.87
CLK3-217ENST00000566126 BRWD1Q9NSI6 2320 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 MROH7Q68CQ1 1323 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 SYNRGQ9UMZ2 1314 aa20.5■□□□□ 0.87
CLK3-217ENST00000566126 MYH1P12882 1939 aa20.49■□□□□ 0.87
CLK3-217ENST00000566126 FGBP02675 491 aa20.49■□□□□ 0.87
CLK3-217ENST00000566126 AKR1A1P14550 325 aa20.49■□□□□ 0.87
CLK3-217ENST00000566126 CYP2C18P33260 490 aa20.49■□□□□ 0.87
CLK3-217ENST00000566126 COG2Q14746 738 aa20.49■□□□□ 0.87
CLK3-217ENST00000566126 RAB3GAP1Q15042 981 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms