RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 HERC5Q9UII4 1024 aaKnown RBP22.29■■□□□ 1.16
CSPG4P13-201ENST00000565545 SHMT1P34896 483 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 CCT2P78371 535 aaKnown RBP22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 HMGN5P82970 282 aaKnown RBP22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 SREBF2Q12772 1141 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 CPLX2Q6PUV4 134 aaKnown RBP22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 CATIPQ7Z7H3 387 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 APOBEC3FQ8IUX4 373 aaKnown RBP22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 ZNF654Q8IZM8 581 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 SMARCC2Q8TAQ2 1214 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 SENP2Q9HC62 589 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 IL17RBQ9NRM6 502 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 KIF3AQ9Y496 699 aa22.28■■□□□ 1.16
CSPG4P13-201ENST00000565545 CCDC196A0A1B0GTZ2 297 aa22.27■■□□□ 1.16
CSPG4P13-201ENST00000565545 GPR25O00155 361 aa22.27■■□□□ 1.16
CSPG4P13-201ENST00000565545 DDAH1O94760 285 aa22.27■■□□□ 1.16
CSPG4P13-201ENST00000565545 GJB2P29033 226 aa22.27■■□□□ 1.16
CSPG4P13-201ENST00000565545 GOLGA8AA7E2F4 631 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 CPLX1O14810 134 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 TBC1D12O60347 775 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 CDKL5O76039 1030 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 PDCP20941 246 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 NOVP48745 357 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 RCSD1Q6JBY9 416 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 TATDN1Q6P1N9 297 aa22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.26■■□□□ 1.15
CSPG4P13-201ENST00000565545 GREB1LQ9C091 1923 aaPredicted RBP22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 PDE4DIPQ5VU43 2346 aa22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 MICU3Q86XE3 530 aa22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 NSUN7Q8NE18 718 aaKnown RBP22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 MAP3K14Q99558 947 aa22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 KAT14Q9H8E8 782 aa22.25■■□□□ 1.15
CSPG4P13-201ENST00000565545 NMT2O60551 498 aa22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 RAB3GAP1Q15042 981 aa22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 RTN1Q16799 776 aa22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 CERKLQ49MI3 558 aaPredicted RBP22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 FANCBQ8NB91 859 aa22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 DNAJC18Q9H819 358 aa22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 NCOA5Q9HCD5 579 aaKnown RBP22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 RBM28Q9NW13 759 aaKnown RBP22.24■■□□□ 1.15
CSPG4P13-201ENST00000565545 IGKV6D-41A0A0C4DH26 115 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 FKTNO75072 461 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 CTDNEP1O95476 244 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 AKR1B1P15121 316 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 MAP3K10Q02779 954 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 PCDH10Q9P2E7 1040 aa22.23■■□□□ 1.15
CSPG4P13-201ENST00000565545 PTPDC1A2A3K4 754 aa22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 TOP1P11387 765 aaKnown RBP22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 TROAPQ12815 778 aa22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 RASA3Q14644 834 aa22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 NOM1Q5C9Z4 860 aaKnown RBP22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 FBXO46Q6PJ61 603 aaPredicted RBP22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.22■■□□□ 1.15
CSPG4P13-201ENST00000565545 LDLRAD1Q5T700 205 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 PRPF38BQ5VTL8 546 aaKnown RBP22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 SPRYD7Q5W111 196 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 FAM184AQ8NB25 1140 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 RGS22Q8NE09 1264 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 NUP133Q8WUM0 1156 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 HOOK2Q96ED9 719 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 SLC10A4Q96EP9 437 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 CEP95Q96GE4 821 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 MYL10Q9BUA6 226 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 TMEM39BQ9GZU3 492 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 DEFB129Q9H1M3 183 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 FAM217BQ9NTX9 383 aaPredicted RBP22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 MTMR4Q9NYA4 1195 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 STX8Q9UNK0 236 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 PPP2R3BQ9Y5P8 575 aa22.21■■□□□ 1.15
CSPG4P13-201ENST00000565545 JAK2O60674 1132 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 BRD1O95696 1058 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 SYT1P21579 422 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 CDC27P30260 824 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 KIF5BP33176 963 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 ADD1P35611 737 aaKnown RBP22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 LARP1BQ659C4 914 aaKnown RBP22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 TMEM179Q6ZVK1 233 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 RAB11FIP4Q86YS3 637 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 PNMA1Q8ND90 353 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 CTCFLQ8NI51 663 aaPredicted RBP22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 TMEM47Q9BQJ4 181 aa22.2■■□□□ 1.14
CSPG4P13-201ENST00000565545 MPHOSPH10O00566 681 aaKnown RBP22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 STX6O43752 255 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 TTLL1O95922 423 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 ALDH1A1P00352 501 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 IFNAR1P17181 557 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 RXRAP19793 462 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 NTRK3Q16288 839 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 ABCB5Q2M3G0 1257 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 R3HDMLQ9H3Y0 253 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 KANSL2Q9H9L4 492 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 CABP5Q9NP86 173 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 FZD1Q9UP38 647 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 STK36Q9NRP7 1315 aa22.19■■□□□ 1.14
CSPG4P13-201ENST00000565545 PPP1R12BO60237 982 aaPredicted RBP22.18■■□□□ 1.14
CSPG4P13-201ENST00000565545 GNAQP50148 359 aa22.18■■□□□ 1.14
CSPG4P13-201ENST00000565545 CCDC144CPQ8IYA2 1237 aa22.18■■□□□ 1.14
CSPG4P13-201ENST00000565545 TEPSINQ96N21 525 aa22.18■■□□□ 1.14
CSPG4P13-201ENST00000565545 MANSC4A6NHS7 340 aaPredicted RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms