RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CEP131Q9UPN4 1083 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 TMA7Q9Y2S6 64 aaKnown RBP7□□□□□ -1.29
LINC00560-201ENST00000564593 PMS1P54277 932 aaKnown RBP6.99□□□□□ -1.29
LINC00560-201ENST00000564593 IFRD2Q12894 506 aaPredicted RBP6.99□□□□□ -1.29
LINC00560-201ENST00000564593 CDK5R2Q13319 367 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 RASGRF1Q13972 1273 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 SEZ6L2Q6UXD5 910 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 RIN3Q8TB24 985 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 PPP1R13LQ8WUF5 828 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 PRDM10Q9NQV6 1147 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 C1GALT1Q9NS00 363 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 COBLO75128 1261 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 SLITRK5O94991 958 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 TP53P04637 393 aaPredicted RBP6.99□□□□□ -1.29
LINC00560-201ENST00000564593 CDH24Q86UP0 819 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 CLEC10AQ8IUN9 316 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 KLHL6Q8WZ60 621 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 DNAJC7Q99615 494 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 FAM86C1Q9NVL1 165 aa6.99□□□□□ -1.29
LINC00560-201ENST00000564593 YBX3P16989 372 aaKnown RBP eCLIP6.98□□□□□ -1.29
LINC00560-201ENST00000564593 MTERF2Q49AM1 385 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 TDRD10Q5VZ19 366 aaKnown RBP6.98□□□□□ -1.29
LINC00560-201ENST00000564593 MRM1Q6IN84 353 aaKnown RBP6.98□□□□□ -1.29
LINC00560-201ENST00000564593 EEPD1Q7L9B9 569 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 PPFIBP1Q86W92 1011 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 FAM177A1Q8N128 213 aaPredicted RBP6.98□□□□□ -1.29
LINC00560-201ENST00000564593 DNAJB8Q8NHS0 232 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 GIMAP7Q8NHV1 300 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 FMNL2Q96PY5 1086 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 FAM83CQ9BQN1 747 aa6.98□□□□□ -1.29
LINC00560-201ENST00000564593 C9IYK1 514 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 ETV3P41162 512 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 JAZF1Q86VZ6 243 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 TOP6BLQ8N6T0 577 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 ZNF512BQ96KM6 892 aaPredicted RBP6.97□□□□□ -1.29
LINC00560-201ENST00000564593 TBX22Q9Y458 520 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 CADPSQ9ULU8 1353 aa6.97□□□□□ -1.29
LINC00560-201ENST00000564593 LCE1DQ5T752 114 aa6.96□□□□□ -1.29
LINC00560-201ENST00000564593 CCDC144CPQ8IYA2 1237 aa6.96□□□□□ -1.29
LINC00560-201ENST00000564593 SMARCC1Q92922 1105 aaPredicted RBP6.96□□□□□ -1.29
LINC00560-201ENST00000564593 KREMEN1Q96MU8 473 aa6.96□□□□□ -1.29
LINC00560-201ENST00000564593 DUSP23Q9BVJ7 150 aa6.96□□□□□ -1.29
LINC00560-201ENST00000564593 MKRN2Q9H000 416 aaKnown RBP6.96□□□□□ -1.29
LINC00560-201ENST00000564593 STOML1Q9UBI4 398 aa6.96□□□□□ -1.29
LINC00560-201ENST00000564593 TPX2Q9ULW0 747 aaKnown RBP6.96□□□□□ -1.29
LINC00560-201ENST00000564593 MRPL42Q9Y6G3 142 aaKnown RBP6.96□□□□□ -1.29
LINC00560-201ENST00000564593 HMX2A2RU54 273 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 LEFTY1O75610 366 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 RNF4P78317 190 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 AXDND1Q5T1B0 1012 aaPredicted RBP6.95□□□□□ -1.3
LINC00560-201ENST00000564593 NBPF12Q5TAG4 269 aaPredicted RBP6.95□□□□□ -1.3
LINC00560-201ENST00000564593 ST13P5Q8NFI4 369 aaPredicted RBP6.95□□□□□ -1.3
LINC00560-201ENST00000564593 RAXQ9Y2V3 346 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 SUSD5O60279 629 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 EOMESO95936 686 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 FAM87AP0C7U9 286 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 CYP7A1P22680 504 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 HEATR6Q6AI08 1181 aaKnown RBP6.95□□□□□ -1.3
LINC00560-201ENST00000564593 SDE2Q6IQ49 451 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 TBC1D32Q96NH3 1257 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 HAUS7Q99871 368 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 C7orf69Q9H7B7 122 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 PFDN2Q9UHV9 154 aa6.95□□□□□ -1.3
LINC00560-201ENST00000564593 ARID1BQ8NFD5 2236 aaPredicted RBP6.94□□□□□ -1.3
LINC00560-201ENST00000564593 DCAF15Q66K64 600 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 SPATC1Q76KD6 591 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 NLGN1Q8N2Q7 840 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 LILRB2Q8N423 598 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 RNF141Q8WVD5 230 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 VWCEQ96DN2 955 aa6.94□□□□□ -1.3
LINC00560-201ENST00000564593 RNPC3Q96LT9 517 aaKnown RBP6.94□□□□□ -1.3
LINC00560-201ENST00000564593 ANKRD34BA5PLL1 514 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 EPHX1P07099 455 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 NAT2P11245 290 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 CANXP27824 592 aaKnown RBP6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ADMP35318 185 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 SSRP1Q08945 709 aaKnown RBP6.93□□□□□ -1.3
LINC00560-201ENST00000564593 SV2CQ496J9 727 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 OGFOD3Q6PK18 319 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 PRR23CQ6ZRP0 262 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ADAT2Q7Z6V5 191 aaKnown RBP6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ZNF669Q96BR6 464 aaPredicted RBP6.93□□□□□ -1.3
LINC00560-201ENST00000564593 FBXL18Q96ME1 805 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 APBA2Q99767 749 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ASPNQ9BXN1 380 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 EPN3Q9H201 632 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 PRDM5Q9NQX1 630 aaPredicted RBP6.93□□□□□ -1.3
LINC00560-201ENST00000564593 PCMTD2Q9NV79 361 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ZMYM5Q9UJ78 669 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 KDM2BQ8NHM5 1336 aa6.93□□□□□ -1.3
LINC00560-201ENST00000564593 ZNF143P52747 638 aaPredicted RBP6.92□□□□□ -1.3
LINC00560-201ENST00000564593 AUHQ13825 339 aaKnown RBP6.92□□□□□ -1.3
LINC00560-201ENST00000564593 TCEAL1Q15170 157 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 SLC10A6Q3KNW5 377 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 ANKRD39Q53RE8 183 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 ZAR1Q86SH2 424 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 C7orf61Q8IZ16 206 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 SH3TC2Q8TF17 1288 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 GATA6Q92908 595 aa6.92□□□□□ -1.3
LINC00560-201ENST00000564593 CNTNAP4Q9C0A0 1308 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms