RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SYCP1Q15431 976 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 IL17AQ16552 155 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 GPIHBP1Q8IV16 184 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 IGSF22Q8N9C0 903 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 CTCFLQ8NI51 663 aaPredicted RBP15.33■□□□□ 0.04
CLK3-215ENST00000564353 COL14A1Q05707 1796 aaKnown RBP15.33■□□□□ 0.04
CLK3-215ENST00000564353 USP17L3A6NCW0 530 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 USP17L4A6NCW7 530 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 PLCD1P51178 756 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 GRIK5Q16478 980 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 USP17L1Q7RTZ2 530 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 RASSF8Q8NHQ8 419 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 ENOX1Q8TC92 643 aaKnown RBP15.33■□□□□ 0.04
CLK3-215ENST00000564353 AK7Q96M32 723 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 SAP30BPQ9UHR5 308 aaKnown RBP15.33■□□□□ 0.04
CLK3-215ENST00000564353 PARP3Q9Y6F1 533 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 RTL9Q8NET4 1388 aa15.33■□□□□ 0.04
CLK3-215ENST00000564353 DDX60Q8IY21 1712 aaKnown RBP15.33■□□□□ 0.04
CLK3-215ENST00000564353 KIF2AO00139 706 aaPredicted RBP15.32■□□□□ 0.04
CLK3-215ENST00000564353 RRAGBQ5VZM2 374 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 TMTC3Q6ZXV5 915 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 NBPF5PQ86XG9 351 aaPredicted RBP15.32■□□□□ 0.04
CLK3-215ENST00000564353 BSDC1Q9NW68 430 aaPredicted RBP15.32■□□□□ 0.04
CLK3-215ENST00000564353 ZNF652Q9Y2D9 606 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 BAZ2AQ9UIF9 1905 aaKnown RBP15.32■□□□□ 0.04
CLK3-215ENST00000564353 ERICH4A6NGS2 130 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 ARHGAP6O43182 974 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 CASP14P31944 242 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 TEX2Q8IWB9 1127 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 MTRQ99707 1265 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 GDAQ9Y2T3 454 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 ZNF804BA4D1E1 1349 aa15.32■□□□□ 0.04
CLK3-215ENST00000564353 CICQ96RK0 1608 aaPredicted RBP15.32■□□□□ 0.04
CLK3-215ENST00000564353 PRPF3O43395 683 aaKnown RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 SLFN14P0C7P3 912 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 CASQ1P31415 396 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 TBX2Q13207 712 aaPredicted RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 RAD9BQ6WBX8 426 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 CCDC12Q8WUD4 166 aaPredicted RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 TAB2Q9NYJ8 693 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 RNF225M0QZC1 329 aaPredicted RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 HIBADHP31937 336 aaKnown RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 RPS8P62241 208 aaKnown RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 TFAP4Q01664 338 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 UBE4AQ14139 1066 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 NR1I3Q14994 352 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 PUF60Q9UHX1 559 aaKnown RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 XDHP47989 1333 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 FAM205AQ6ZU69 1335 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 CNTNAP5Q8WYK1 1306 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 MYH2Q9UKX2 1941 aa15.31■□□□□ 0.04
CLK3-215ENST00000564353 MYH14Q7Z406 1995 aaKnown RBP15.31■□□□□ 0.04
CLK3-215ENST00000564353 SPATA31A5Q5VU36 1347 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 SPATA31A7Q8IWB4 1347 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 TRIM49BA6NDI0 452 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 DHX8Q14562 1220 aaKnown RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 NT5DC1Q5TFE4 455 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 TYW1BQ6NUM6 668 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 DZIP1Q86YF9 867 aaKnown RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 ACRBPQ8NEB7 543 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 C8orf37Q96NL8 207 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 BRMS1Q9HCU9 246 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 KCND1Q9NSA2 647 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 STX8Q9UNK0 236 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 TFR2Q9UP52 801 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 DOT1LQ8TEK3 1739 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 GNPATO15228 680 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 POLR3GO15318 223 aaPredicted RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 ZSCAN12O43309 604 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 FXR1P51114 621 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLK3-215ENST00000564353 CERS3Q8IU89 383 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 KRT222Q8N1A0 295 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 CCDC34Q96HJ3 373 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 DACH1Q9UI36 760 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 PPP1R3GB7ZBB8 358 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 AKR1B15C9JRZ8 316 aaPredicted RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 PPFIBP1Q86W92 1011 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 ZNF579Q8NAF0 562 aaKnown RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 ANKIB1Q9P2G1 1089 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 ANAPC4Q9UJX5 808 aa15.3■□□□□ 0.04
CLK3-215ENST00000564353 MORC2Q9Y6X9 1032 aaPredicted RBP15.3■□□□□ 0.04
CLK3-215ENST00000564353 SCG2P13521 617 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 USP5P45974 858 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 APTXQ7Z2E3 356 aaKnown RBP15.29■□□□□ 0.04
CLK3-215ENST00000564353 ANKRD36CQ5JPF3 1778 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 LTBP4Q8N2S1 1624 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 ERCC3P19447 782 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 HEATR3Q7Z4Q2 680 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 NLRP3Q96P20 1036 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 UIMC1Q96RL1 719 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 SETDB2Q96T68 719 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 CRNKL1Q9BZJ0 848 aaKnown RBP15.29■□□□□ 0.04
CLK3-215ENST00000564353 VAT1LQ9HCJ6 419 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 BCL9LQ86UU0 1499 aa15.29■□□□□ 0.04
CLK3-215ENST00000564353 AHDC1Q5TGY3 1603 aaPredicted RBP15.28■□□□□ 0.04
CLK3-215ENST00000564353 N4BP3O15049 544 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 SPATA1Q5VX52 437 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 SH3RF3Q8TEJ3 882 aaPredicted RBP15.28■□□□□ 0.04
CLK3-215ENST00000564353 TNFRSF25Q93038 417 aa15.28■□□□□ 0.04
CLK3-215ENST00000564353 BRIP1Q9BX63 1249 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms