RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 ZKSCAN1P17029 563 aaPredicted RBP21.19■□□□□ 0.98
NME3-205ENST00000563854 RGS2P41220 211 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 SH2D4AQ9H788 454 aa21.19■□□□□ 0.98
NME3-205ENST00000563854 PAK6Q9NQU5 681 aaPredicted RBP21.19■□□□□ 0.98
NME3-205ENST00000563854 GSG1L2A8MUP6 293 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 GLRX3O76003 335 aaKnown RBP21.18■□□□□ 0.98
NME3-205ENST00000563854 MX1P20591 662 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 TDO2P48775 406 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 LRRFIP1Q32MZ4 808 aaKnown RBP21.18■□□□□ 0.98
NME3-205ENST00000563854 KIAA1755Q5JYT7 1200 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 ANKRD45Q5TZF3 282 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 PI4K2BQ8TCG2 481 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 GCC1Q96CN9 775 aa21.18■□□□□ 0.98
NME3-205ENST00000563854 HMX1Q9NP08 348 aaPredicted RBP21.18■□□□□ 0.98
NME3-205ENST00000563854 PRKAR2AP13861 404 aaKnown RBP21.17■□□□□ 0.98
NME3-205ENST00000563854 CCL14Q16627 93 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 APBA2Q99767 749 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 HTATIP2Q9BUP3 242 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 TMX2Q9Y320 296 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 IVNS1ABPQ9Y6Y0 642 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 RPTORQ8N122 1335 aa21.17■□□□□ 0.98
NME3-205ENST00000563854 H0YGN5 161 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 FLOT1O75955 427 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 EEF2P13639 858 aaKnown RBP21.16■□□□□ 0.98
NME3-205ENST00000563854 COG2Q14746 738 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 MORN1Q5T089 497 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 LBX2Q6XYB7 198 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 UBE2Q1Q7Z7E8 422 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 SIAH1Q8IUQ4 282 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 LPAR1Q92633 364 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 SEC62Q99442 399 aaKnown RBP21.16■□□□□ 0.98
NME3-205ENST00000563854 VCPKMTQ9H867 229 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 MKNK2Q9HBH9 465 aa21.16■□□□□ 0.98
NME3-205ENST00000563854 EPB41L4AQ9HCS5 686 aaPredicted RBP21.16■□□□□ 0.98
NME3-205ENST00000563854 XRCC5P13010 732 aaKnown RBP21.15■□□□□ 0.98
NME3-205ENST00000563854 GNAT2P19087 354 aa21.15■□□□□ 0.98
NME3-205ENST00000563854 MAP2K5Q13163 448 aa21.15■□□□□ 0.98
NME3-205ENST00000563854 PLS1Q14651 629 aa21.15■□□□□ 0.98
NME3-205ENST00000563854 SBK1Q52WX2 424 aa21.15■□□□□ 0.98
NME3-205ENST00000563854 HOXC10Q9NYD6 342 aa21.15■□□□□ 0.98
NME3-205ENST00000563854 GIMAP6Q6P9H5 292 aa21.14■□□□□ 0.97
NME3-205ENST00000563854 TRMT44Q8IYL2 757 aaKnown RBP21.14■□□□□ 0.97
NME3-205ENST00000563854 USP6NLQ92738 828 aa21.14■□□□□ 0.97
NME3-205ENST00000563854 CRISPLD2Q9H0B8 497 aa21.14■□□□□ 0.97
NME3-205ENST00000563854 KANSL2Q9H9L4 492 aa21.14■□□□□ 0.97
NME3-205ENST00000563854 WDR46O15213 610 aaKnown RBP21.13■□□□□ 0.97
NME3-205ENST00000563854 PTPREP23469 700 aa21.13■□□□□ 0.97
NME3-205ENST00000563854 DIS3LQ8TF46 1054 aaKnown RBP21.13■□□□□ 0.97
NME3-205ENST00000563854 ATG4CQ96DT6 458 aa21.13■□□□□ 0.97
NME3-205ENST00000563854 PAWRQ96IZ0 340 aaKnown RBP21.13■□□□□ 0.97
NME3-205ENST00000563854 MOV10L1Q9BXT6 1211 aaKnown RBP21.13■□□□□ 0.97
NME3-205ENST00000563854 GOPCQ9HD26 462 aa21.13■□□□□ 0.97
NME3-205ENST00000563854 A0A0G2JMZ2 1700 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 ROBO3Q96MS0 1386 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 SLC15A5A6NIM6 579 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 PRDM1O75626 825 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 RASA1P20936 1047 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 DSG3P32926 999 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 CACNB2Q08289 660 aaPredicted RBP21.12■□□□□ 0.97
NME3-205ENST00000563854 SPATC1LQ9H0A9 340 aa21.12■□□□□ 0.97
NME3-205ENST00000563854 CCND3P30281 292 aaPredicted RBP21.11■□□□□ 0.97
NME3-205ENST00000563854 HDAC1Q13547 482 aaPredicted RBP21.11■□□□□ 0.97
NME3-205ENST00000563854 HABP4Q5JVS0 413 aaKnown RBP21.11■□□□□ 0.97
NME3-205ENST00000563854 MAP3K21Q5TCX8 1036 aa21.11■□□□□ 0.97
NME3-205ENST00000563854 IFNL3Q8IZI9 196 aa21.11■□□□□ 0.97
NME3-205ENST00000563854 NACAP1Q9BZK3 213 aa21.11■□□□□ 0.97
NME3-205ENST00000563854 PCDH10Q9P2E7 1040 aa21.11■□□□□ 0.97
NME3-205ENST00000563854 SALL3Q9BXA9 1300 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 PATL2C9JE40 543 aaKnown RBP21.1■□□□□ 0.97
NME3-205ENST00000563854 ERCC3P19447 782 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 GRB14Q14449 540 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 ZMYM1Q5SVZ6 1142 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 FAM83BQ5T0W9 1011 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 MFSD14CQ5VZR4 134 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 CCDC129Q6ZRS4 1044 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 NECAB2Q7Z6G3 386 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 NCAPG2Q86XI2 1143 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 ZNF444Q8N0Y2 327 aaPredicted RBP21.1■□□□□ 0.97
NME3-205ENST00000563854 MB21D1Q8N884 522 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.1■□□□□ 0.97
NME3-205ENST00000563854 NAPBQ9H115 298 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 FBXO28Q9NVF7 368 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 FLRT1Q9NZU1 646 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 COLQQ9Y215 455 aaPredicted RBP21.1■□□□□ 0.97
NME3-205ENST00000563854 RLFQ13129 1914 aa21.1■□□□□ 0.97
NME3-205ENST00000563854 EVI5O60447 810 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 CAPN2P17655 700 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 DPP9Q86TI2 863 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 NPLOC4Q8TAT6 608 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 NUP88Q99567 741 aaPredicted RBP21.09■□□□□ 0.97
NME3-205ENST00000563854 ZNF287Q9HBT7 754 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 NR2E3Q9Y5X4 410 aa21.09■□□□□ 0.97
NME3-205ENST00000563854 GREB1LQ9C091 1923 aaPredicted RBP21.08■□□□□ 0.97
NME3-205ENST00000563854 ADORA2AP29274 412 aa21.08■□□□□ 0.97
NME3-205ENST00000563854 CHRDL2Q6WN34 429 aa21.08■□□□□ 0.97
NME3-205ENST00000563854 ANKLE1Q8NAG6 615 aa21.08■□□□□ 0.97
NME3-205ENST00000563854 LNPKQ9C0E8 428 aa21.08■□□□□ 0.97
NME3-205ENST00000563854 PARP14Q460N5 1801 aa21.07■□□□□ 0.96
NME3-205ENST00000563854 CNGA1P29973 690 aa21.07■□□□□ 0.96
NME3-205ENST00000563854 CYP2C19P33261 490 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms