RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 KANSL2Q9H9L4 492 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 AS3MTQ9HBK9 375 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 WBP1LQ9NX94 342 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 RNF186Q9NXI6 227 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 NYAP2Q9P242 653 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 CLIP2Q9UDT6 1046 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 TMX2Q9Y320 296 aa11.57□□□□□ -0.56
CLK3-208ENST00000562626 REC8O95072 547 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 CETPP11597 493 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 CAP1Q01518 475 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 SEC23AQ15436 765 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 ENAHQ8N8S7 591 aaPredicted RBP11.56□□□□□ -0.56
CLK3-208ENST00000562626 C12orf42Q96LP6 360 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 TCEANC2Q96MN5 208 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 FEZ1Q99689 392 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 TMEM47Q9BQJ4 181 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 LRRC2Q9BYS8 371 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 ZNF287Q9HBT7 754 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 ADGRA2Q96PE1 1338 aa11.56□□□□□ -0.56
CLK3-208ENST00000562626 PDHXO00330 501 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TRPA1O75762 1119 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TBC1D8O95759 1140 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 CYP2C8P10632 490 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 PCP11498 1178 aaKnown RBP11.55□□□□□ -0.56
CLK3-208ENST00000562626 VCAM1P19320 739 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 SREBF2Q12772 1141 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 CRHR2Q13324 411 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TSGA10IPQ3SY00 556 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 USP17L2Q6R6M4 530 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 ANKRD23Q86SG2 305 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 PROCA1Q8NCQ7 364 aaPredicted RBP11.55□□□□□ -0.56
CLK3-208ENST00000562626 NCOA7Q8NI08 942 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 ESR2Q92731 530 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 MKL1Q969V6 931 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TBC1D2Q9BYX2 928 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 KRT23Q9C075 422 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 VCPKMTQ9H867 229 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 ARHGEF10LQ9HCE6 1279 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TCP11L1Q9NUJ3 509 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 STX8Q9UNK0 236 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 AGTPBP1Q9UPW5 1226 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 MCM3APO60318 1980 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 TNKSO95271 1327 aa11.55□□□□□ -0.56
CLK3-208ENST00000562626 C19orf81C9J6K1 198 aa11.54□□□□□ -0.56
CLK3-208ENST00000562626 TTLL1O95922 423 aa11.54□□□□□ -0.56
CLK3-208ENST00000562626 NDUFB10O96000 172 aa11.54□□□□□ -0.56
CLK3-208ENST00000562626 ZSCAN10Q96SZ4 725 aaPredicted RBP11.54□□□□□ -0.56
CLK3-208ENST00000562626 RPAP3Q9H6T3 665 aaPredicted RBP11.54□□□□□ -0.56
CLK3-208ENST00000562626 CNNM2Q9H8M5 875 aa11.54□□□□□ -0.56
CLK3-208ENST00000562626 FBXO28Q9NVF7 368 aa11.54□□□□□ -0.56
CLK3-208ENST00000562626 F5H6K3 240 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 PRC1O43663 620 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 INHBEP58166 350 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 EXOSC10Q01780 885 aaKnown RBP11.53□□□□□ -0.56
CLK3-208ENST00000562626 KLRC3Q07444 240 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 FAM83BQ5T0W9 1011 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 FASTKD5Q7L8L6 764 aaKnown RBP11.53□□□□□ -0.56
CLK3-208ENST00000562626 RALYLQ86SE5 291 aaKnown RBP11.53□□□□□ -0.56
CLK3-208ENST00000562626 IGDCC4Q8TDY8 1250 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 ANKS1AQ92625 1134 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 JAKMIP1Q96N16 626 aaKnown RBP11.53□□□□□ -0.56
CLK3-208ENST00000562626 NEK1Q96PY6 1258 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 ASCC2Q9H1I8 757 aaPredicted RBP11.53□□□□□ -0.56
CLK3-208ENST00000562626 MTMR7Q9Y216 660 aa11.53□□□□□ -0.56
CLK3-208ENST00000562626 SH2B2O14492 632 aaPredicted RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 RAD21O60216 631 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 TOP1P11387 765 aaKnown RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 HOXA7P31268 230 aaPredicted RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 LBX1P52954 281 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 USP14P54578 494 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 MAP2K1Q02750 393 aaPredicted RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 TAF1CQ15572 869 aaPredicted RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 RNF20Q5VTR2 975 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 SLFN13Q68D06 897 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 P2RX7Q99572 595 aaKnown RBP11.52□□□□□ -0.57
CLK3-208ENST00000562626 LY9Q9HBG7 655 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 TMOD4Q9NZQ9 345 aa11.52□□□□□ -0.57
CLK3-208ENST00000562626 IFIT3O14879 490 aaKnown RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 WDR46O15213 610 aaKnown RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 EPB41L2O43491 1005 aaKnown RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 CA12O43570 354 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 CNMDO75829 334 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 HSPA8P11142 646 aaKnown RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 MCCP23508 829 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 CTGFP29279 349 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 TRDNQ13061 729 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 SLC35G1Q2M3R5 365 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 TTBK2Q6IQ55 1244 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 CATSPERGQ6ZRH7 1159 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 KCTD1Q719H9 257 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 DGKHQ86XP1 1220 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 RAB11FIP4Q86YS3 637 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 REM2Q8IYK8 340 aaPredicted RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 GMCL1P1Q8NEA9 526 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 KIF2CQ99661 725 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 MYL10Q9BUA6 226 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 CPVLQ9H3G5 476 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 GOPCQ9HD26 462 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 TXNRD2Q9NNW7 524 aa11.51□□□□□ -0.57
CLK3-208ENST00000562626 CPA4Q9UI42 421 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms