RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TMEM179Q6ZVK1 233 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 MAPKAPK5Q8IW41 473 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 CCAR1Q8IX12 1150 aaKnown RBP8.62□□□□□ -1.03
VPS39-204ENST00000561818 TRIML1Q8N9V2 468 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 FSIP1Q8NA03 581 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 MTMR14Q8NCE2 650 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 PHKBQ93100 1093 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 FBXW7Q969H0 707 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 BPIFA3Q9BQP9 254 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 SDF4Q9BRK5 362 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 KANSL2Q9H9L4 492 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 MAGEF1Q9HAY2 307 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 USP40Q9NVE5 1235 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 PIM2Q9P1W9 311 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 CCDC39Q9UFE4 941 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 RGS17Q9UGC6 210 aaPredicted RBP8.62□□□□□ -1.03
VPS39-204ENST00000561818 STX8Q9UNK0 236 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 SSUH2Q9Y2M2 353 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 STK24Q9Y6E0 443 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 TCHHQ07283 1943 aa8.62□□□□□ -1.03
VPS39-204ENST00000561818 RIMBP2O15034 1052 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 SLC26A4O43511 780 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 NRDCO43847 1150 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 GADD45BO75293 160 aaPredicted RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 SYKP43405 635 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 FUT2Q10981 343 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 KRT25Q7Z3Z0 450 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 FAM83AQ86UY5 434 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 METTL16Q86W50 562 aaKnown RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 NIM1KQ8IY84 436 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 PIP4P2Q8N4L2 257 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 DCAF4Q8WV16 495 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 JDP2Q8WYK2 163 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 ZKSCAN3Q9BRR0 538 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 RAB34Q9BZG1 259 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 C6orf50Q9HD87 102 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 CABP5Q9NP86 173 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 GPHNQ9NQX3 736 aaPredicted RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 BARHL2Q9NY43 387 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 MTMR4Q9NYA4 1195 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 TFIP11Q9UBB9 837 aaKnown RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 CD2APQ9Y5K6 639 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 SRPRBQ9Y5M8 271 aaKnown RBP8.61□□□□□ -1.03
VPS39-204ENST00000561818 EP400Q96L91 3159 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 PSME4Q14997 1843 aa8.61□□□□□ -1.03
VPS39-204ENST00000561818 MYH1P12882 1939 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 CCDC194A0A1B0GVG4 234 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PALM3A6NDB9 673 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 SMTNL1A8MU46 457 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PRDM1O75626 825 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 WDHD1O75717 1129 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 SMC2O95347 1197 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PTPREP23469 700 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PRPHP41219 470 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PPP1R2P41236 205 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 GUCY1B3Q02153 619 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 TYRO3Q06418 890 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 COL9A3Q14050 684 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 MSL1Q68DK7 614 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 APOBEC3HQ6NTF7 200 aaKnown RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 RSBN1LQ6PCB5 846 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 CCDC144CPQ8IYA2 1237 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 FMR1NBQ8N0W7 255 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 FAM43AQ8N2R8 423 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 LARGE2Q8N3Y3 721 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PDLIM2Q96JY6 352 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 AK8Q96MA6 479 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 FUCA2Q9BTY2 467 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 CUEDC2Q9H467 287 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 NYAP2Q9P242 653 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 ZNRF3Q9ULT6 936 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PCDHA7Q9UN72 937 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 PCDHA4Q9UN74 947 aa8.6□□□□□ -1.03
VPS39-204ENST00000561818 V9GY48 417 aaPredicted RBP8.6□□□□□ -1.03
VPS39-204ENST00000561818 MYH6P13533 1939 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 IGKV6D-41A0A0C4DH26 115 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 BECN2A8MW95 431 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 KLRF2D3W0D1 207 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 NR1I2O75469 434 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 VIL1P09327 827 aaKnown RBP8.59□□□□□ -1.03
VPS39-204ENST00000561818 SNHG28P0DPA3 235 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 GCFC2P16383 781 aaKnown RBP8.59□□□□□ -1.03
VPS39-204ENST00000561818 RXRAP19793 462 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 MSNP26038 577 aaKnown RBP8.59□□□□□ -1.03
VPS39-204ENST00000561818 LONP1P36776 959 aaKnown RBP8.59□□□□□ -1.03
VPS39-204ENST00000561818 PLCD1P51178 756 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 RBM5P52756 815 aaKnown RBP eCLIP8.59□□□□□ -1.03
VPS39-204ENST00000561818 DLGAP5Q15398 846 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 DALRD3Q5D0E6 543 aaKnown RBP8.59□□□□□ -1.03
VPS39-204ENST00000561818 FAM47AQ5JRC9 791 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 RESP18Q5W5W9 173 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 CDC42EP5Q6NZY7 148 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 BLIDQ8IZY5 108 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 KCTD17Q8N5Z5 321 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 GMCL1P1Q8NEA9 526 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 ENGASEQ8NFI3 743 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 MKL1Q969V6 931 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 PGBD1Q96JS3 809 aa8.59□□□□□ -1.03
VPS39-204ENST00000561818 TMEM47Q9BQJ4 181 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms