RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 COG2Q14746 738 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 SBK1Q52WX2 424 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 ANKRD45Q5TZF3 282 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 GIMAP6Q6P9H5 292 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 SOCS4Q8WXH5 440 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 TRIB2Q92519 343 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 HOXC10Q9NYD6 342 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 ARPP21Q9UBL0 812 aaPredicted RBP12.34□□□□□ -0.43
CLK3-205ENST00000561673 TMX2Q9Y320 296 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 DOCK3Q8IZD9 2030 aa12.33□□□□□ -0.43
CLK3-205ENST00000561673 MINDY4BA8MYZ0 360 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 GPAA1O43292 621 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 SLC34A2O95436 690 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 EEF2P13639 858 aaKnown RBP12.33□□□□□ -0.44
CLK3-205ENST00000561673 MX1P20591 662 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 SPICE1Q8N0Z3 855 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 STK11IPQ8N1F8 1099 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 LPAR1Q92633 364 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 DPF3Q92784 378 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLK3-205ENST00000561673 TANGO6Q9C0B7 1094 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 CRISPLD2Q9H0B8 497 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLK3-205ENST00000561673 ARHGEF10LQ9HCE6 1279 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 HMX1Q9NP08 348 aaPredicted RBP12.33□□□□□ -0.44
CLK3-205ENST00000561673 RPTORQ8N122 1335 aa12.33□□□□□ -0.44
CLK3-205ENST00000561673 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 H0YGN5 161 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 FARP2O94887 1054 aaPredicted RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 APPP05067 770 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 CAPN2P17655 700 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 GNAT2P19087 354 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 RGS2P41220 211 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 ATP2B2Q01814 1243 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 HDAC1Q13547 482 aaPredicted RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 CCL14Q16627 93 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 LRRFIP1Q32MZ4 808 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 MAP3K21Q5TCX8 1036 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 TRMT44Q8IYL2 757 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 GCC1Q96CN9 775 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 SEC62Q99442 399 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 SH2D4AQ9H788 454 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 VCPKMTQ9H867 229 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 KANSL2Q9H9L4 492 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 CWC22Q9HCG8 908 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 EPB41L4AQ9HCS5 686 aaPredicted RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 SALL3Q9BXA9 1300 aa12.32□□□□□ -0.44
CLK3-205ENST00000561673 RANBP2P49792 3224 aaKnown RBP12.32□□□□□ -0.44
CLK3-205ENST00000561673 SLC15A5A6NIM6 579 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 PRKAR2AP13861 404 aaKnown RBP12.31□□□□□ -0.44
CLK3-205ENST00000561673 ZKSCAN1P17029 563 aaPredicted RBP12.31□□□□□ -0.44
CLK3-205ENST00000561673 RASA1P20936 1047 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 PTPREP23469 700 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 DSG3P32926 999 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 CACNB2Q08289 660 aaPredicted RBP12.31□□□□□ -0.44
CLK3-205ENST00000561673 MAP2K5Q13163 448 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 WDR78Q5VTH9 848 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 FSD1Q9BTV5 496 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 MKNK2Q9HBH9 465 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 ZBTB47Q9UFB7 747 aaPredicted RBP12.31□□□□□ -0.44
CLK3-205ENST00000561673 PLXNB2O15031 1838 aa12.31□□□□□ -0.44
CLK3-205ENST00000561673 BAZ2AQ9UIF9 1905 aaKnown RBP12.31□□□□□ -0.44
CLK3-205ENST00000561673 DNAH12Q6ZR08 3092 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 WDR46O15213 610 aaKnown RBP12.3□□□□□ -0.44
CLK3-205ENST00000561673 FLOT1O75955 427 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 TDO2P48775 406 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 GRB14Q14449 540 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 ZMYM1Q5SVZ6 1142 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 MB21D1Q8N884 522 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 APBA2Q99767 749 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 HTATIP2Q9BUP3 242 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 MOV10L1Q9BXT6 1211 aaKnown RBP12.3□□□□□ -0.44
CLK3-205ENST00000561673 SPATC1LQ9H0A9 340 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 FLRT1Q9NZU1 646 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 STAP2Q9UGK3 403 aa12.3□□□□□ -0.44
CLK3-205ENST00000561673 MYH7P12883 1935 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 PRDM1O75626 825 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 PDE1AP54750 535 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 AAMPQ13685 434 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 HABP4Q5JVS0 413 aaKnown RBP12.29□□□□□ -0.44
CLK3-205ENST00000561673 DIS3LQ8TF46 1054 aaKnown RBP12.29□□□□□ -0.44
CLK3-205ENST00000561673 ATG4CQ96DT6 458 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 PAWRQ96IZ0 340 aaKnown RBP12.29□□□□□ -0.44
CLK3-205ENST00000561673 GOPCQ9HD26 462 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 IVNS1ABPQ9Y6Y0 642 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 ROBO3Q96MS0 1386 aa12.29□□□□□ -0.44
CLK3-205ENST00000561673 STRNO43815 780 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 RAD21O60216 631 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 HOXC6P09630 235 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 ERCC3P19447 782 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 CCND3P30281 292 aaPredicted RBP12.28□□□□□ -0.44
CLK3-205ENST00000561673 MNX1P50219 401 aaPredicted RBP12.28□□□□□ -0.44
CLK3-205ENST00000561673 PLS1Q14651 629 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 TMEM132BQ14DG7 1078 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 CCDC129Q6ZRS4 1044 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 NECAB2Q7Z6G3 386 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 ZNF444Q8N0Y2 327 aaPredicted RBP12.28□□□□□ -0.44
CLK3-205ENST00000561673 ANKLE1Q8NAG6 615 aa12.28□□□□□ -0.44
CLK3-205ENST00000561673 SHCBP1Q8NEM2 672 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms