RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 SMCR8Q8TEV9 937 aaPredicted RBP16.51■□□□□ 0.23
TPM1-230ENST00000561266 ARHGEF10LQ9HCE6 1279 aa16.51■□□□□ 0.23
TPM1-230ENST00000561266 NYAP2Q9P242 653 aa16.51■□□□□ 0.23
TPM1-230ENST00000561266 CLIP2Q9UDT6 1046 aa16.51■□□□□ 0.23
TPM1-230ENST00000561266 NEDD4P46934 1319 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 CENPFP49454 3210 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L15C9J2P7 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L13C9JLJ4 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L11C9JVI0 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L18D6R9N7 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L22D6RA61 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L17D6RBQ6 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L19D6RCP7 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L20D6RJB6 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 PSMC4P43686 418 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 MFAP1P55081 439 aaKnown RBP16.5■□□□□ 0.23
TPM1-230ENST00000561266 IRX3P78415 501 aaPredicted RBP16.5■□□□□ 0.23
TPM1-230ENST00000561266 USP17L24Q0WX57 530 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 RASGRP2Q7LDG7 609 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 NUP88Q99567 741 aaPredicted RBP16.5■□□□□ 0.23
TPM1-230ENST00000561266 EFCC1Q9HA90 598 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 PNMA3Q9UL41 463 aa16.5■□□□□ 0.23
TPM1-230ENST00000561266 RAD50Q92878 1312 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 A0A0G2JMZ2 1700 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 SPDYE16A6NNV3 312 aaPredicted RBP16.49■□□□□ 0.23
TPM1-230ENST00000561266 RANBP6O60518 1105 aaKnown RBP16.49■□□□□ 0.23
TPM1-230ENST00000561266 SLC3A2P08195 630 aaKnown RBP16.49■□□□□ 0.23
TPM1-230ENST00000561266 TSPY3P0CV98 308 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 TSPY8P0CW00 308 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 PABPC4Q13310 644 aaKnown RBP eCLIP16.49■□□□□ 0.23
TPM1-230ENST00000561266 RRP12Q5JTH9 1297 aaKnown RBP16.49■□□□□ 0.23
TPM1-230ENST00000561266 AKNAD1Q5T1N1 836 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 LRRC47Q8N1G4 583 aaKnown RBP16.49■□□□□ 0.23
TPM1-230ENST00000561266 STAG1Q8WVM7 1258 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 MKL1Q969V6 931 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 CHMP4CQ96CF2 233 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 FBXO28Q9NVF7 368 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 BTBD7Q9P203 1132 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 MORF4L1Q9UBU8 362 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 GABRQQ9UN88 632 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 PTPN22Q9Y2R2 807 aa16.49■□□□□ 0.23
TPM1-230ENST00000561266 NOVP48745 357 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 FAM110CQ1W6H9 321 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 ERICH6BQ5W0A0 696 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 FBXO46Q6PJ61 603 aaPredicted RBP16.48■□□□□ 0.23
TPM1-230ENST00000561266 ESYT1Q9BSJ8 1104 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 ZNF287Q9HBT7 754 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 HPS5Q9UPZ3 1129 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 PTCH2Q9Y6C5 1203 aa16.48■□□□□ 0.23
TPM1-230ENST00000561266 TSPY2A6NKD2 308 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 F5H6K3 240 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 ZNF213O14771 459 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 CAPN15O75808 1086 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 NDUFB10O96000 172 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 GCLCP48506 637 aaPredicted RBP16.47■□□□□ 0.23
TPM1-230ENST00000561266 KLRC3Q07444 240 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 COL9A3Q14050 684 aaPredicted RBP16.47■□□□□ 0.23
TPM1-230ENST00000561266 FAM83BQ5T0W9 1011 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 RUFY2Q8WXA3 655 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 PAGR1Q9BTK6 254 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 LSG1Q9H089 658 aaKnown RBP16.47■□□□□ 0.23
TPM1-230ENST00000561266 PORCNQ9H237 461 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 TOMM22Q9NS69 142 aa16.47■□□□□ 0.23
TPM1-230ENST00000561266 RAD21O60216 631 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 FMNL1O95466 1100 aaPredicted RBP16.46■□□□□ 0.23
TPM1-230ENST00000561266 TTLL1O95922 423 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 CYP21A2P08686 494 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 RCSD1Q6JBY9 416 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 MFSD6Q6ZSS7 791 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 LPAR1Q92633 364 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 ATG4CQ96DT6 458 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 ZKSCAN3Q9BRR0 538 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 TANGO6Q9C0B7 1094 aa16.46■□□□□ 0.23
TPM1-230ENST00000561266 SMCHD1A6NHR9 2005 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 B4E1Z4 1266 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 WDR46O15213 610 aaKnown RBP16.45■□□□□ 0.22
TPM1-230ENST00000561266 DSG3P32926 999 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 ERVK-9P63128 1117 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 ERVK-24P63145 666 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 PRKCZQ05513 592 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 COG2Q14746 738 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 PKN2Q16513 984 aaKnown RBP16.45■□□□□ 0.22
TPM1-230ENST00000561266 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
TPM1-230ENST00000561266 LBX2Q6XYB7 198 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 STOX1Q6ZVD7 989 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 MAP4K1Q92918 833 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 SH2D4AQ9H788 454 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 SRRDQ9UH36 339 aa16.45■□□□□ 0.22
TPM1-230ENST00000561266 KDM4AO75164 1064 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 FLOT1O75955 427 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 FCGRTP55899 365 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 KIF22Q14807 665 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 IFFO2Q5TF58 517 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 GOPCQ9HD26 462 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 TCP11L1Q9NUJ3 509 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 ZSWIM5Q9P217 1185 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 CTNNA3Q9UI47 895 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 GJD2Q9UKL4 321 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 ADAMTS5Q9UNA0 930 aa16.44■□□□□ 0.22
TPM1-230ENST00000561266 RBM8AQ9Y5S9 174 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms