RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 PLS1Q14651 629 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 COG2Q14746 738 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 TMEM67Q5HYA8 995 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 SPICE1Q8N0Z3 855 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 LSG1Q9H089 658 aaKnown RBP12.56□□□□□ -0.4
TPM1-229ENST00000561242 TCP11L1Q9NUJ3 509 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 SSC5DA1L4H1 1573 aa12.56□□□□□ -0.4
TPM1-229ENST00000561242 SLC27A2O14975 620 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 BMP3P12645 472 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 GJA5P36382 358 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 SLC4A3P48751 1232 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 SP3Q02447 781 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 BLOC1S2Q6QNY1 142 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 FAM160B2Q86V87 743 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 ACER1Q8TDN7 264 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 MS4A4AQ96JQ5 239 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 TMEM87BQ96K49 555 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 ZKSCAN3Q9BRR0 538 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 PAGR1Q9BTK6 254 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 FEM1BQ9UK73 627 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 PNMA2Q9UL42 364 aa12.55□□□□□ -0.4
TPM1-229ENST00000561242 TLR2O60603 784 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 CYP21A2P08686 494 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 CALM1P0DP23 149 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 CALM2P0DP24 149 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 CALM3P0DP25 149 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 FDX1P10109 184 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 KIF5BP33176 963 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 TRAF1Q13077 416 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 RRP1BQ14684 758 aaKnown RBP12.54□□□□□ -0.4
TPM1-229ENST00000561242 TBC1D10CQ8IV04 446 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 LRRC47Q8N1G4 583 aaKnown RBP12.54□□□□□ -0.4
TPM1-229ENST00000561242 FAM43AQ8N2R8 423 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 MB21D1Q8N884 522 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 GPRC5AQ8NFJ5 357 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 CTCFLQ8NI51 663 aaPredicted RBP12.54□□□□□ -0.4
TPM1-229ENST00000561242 DCAF4Q8WV16 495 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 COA7Q96BR5 231 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 INCENPQ9NQS7 918 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 ZSWIM5Q9P217 1185 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.54□□□□□ -0.4
TPM1-229ENST00000561242 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.54□□□□□ -0.4
TPM1-229ENST00000561242 IVNS1ABPQ9Y6Y0 642 aa12.54□□□□□ -0.4
TPM1-229ENST00000561242 UTRNP46939 3433 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 GPR25O00155 361 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 PRC1O43663 620 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 FGRP09769 529 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 VCAM1P19320 739 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 HOXA7P31268 230 aaPredicted RBP12.53□□□□□ -0.4
TPM1-229ENST00000561242 COPB2P35606 906 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 GNAQP50148 359 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 STAT2P52630 851 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 LBX1P52954 281 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 FCGRTP55899 365 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 CRHR2Q13324 411 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 GPATCH4Q5T3I0 446 aaKnown RBP12.53□□□□□ -0.4
TPM1-229ENST00000561242 RCSD1Q6JBY9 416 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 PRPF38AQ8NAV1 312 aaKnown RBP12.53□□□□□ -0.4
TPM1-229ENST00000561242 GMCL1P1Q8NEA9 526 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 NUP133Q8WUM0 1156 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 MKL1Q969V6 931 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 KIFC2Q96AC6 838 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 CHMP4CQ96CF2 233 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 C12orf42Q96LP6 360 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 JAKMIP1Q96N16 626 aaKnown RBP12.53□□□□□ -0.4
TPM1-229ENST00000561242 ZIC5Q96T25 663 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 MTA3Q9BTC8 594 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 ASCC2Q9H1I8 757 aaPredicted RBP12.53□□□□□ -0.4
TPM1-229ENST00000561242 EMILIN3Q9NT22 766 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 SLC5A4Q9NY91 659 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 CPA4Q9UI42 421 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 SLC12A7Q9Y666 1083 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 CYP46A1Q9Y6A2 500 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 TNKSO95271 1327 aa12.53□□□□□ -0.4
TPM1-229ENST00000561242 TMEM232C9JQI7 657 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 IGF2BP3O00425 579 aaKnown RBP eCLIP12.52□□□□□ -0.41
TPM1-229ENST00000561242 PARP1P09874 1014 aaKnown RBP12.52□□□□□ -0.41
TPM1-229ENST00000561242 CYP2C8P10632 490 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 EVX2Q03828 476 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 NECTIN1Q15223 517 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 FAM83BQ5T0W9 1011 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 CATSPERGQ6ZRH7 1159 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 DHX32Q7L7V1 743 aaKnown RBP12.52□□□□□ -0.41
TPM1-229ENST00000561242 PIAS4Q8N2W9 510 aaPredicted RBP12.52□□□□□ -0.41
TPM1-229ENST00000561242 ANKRD13CQ8N6S4 541 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 PNMA1Q8ND90 353 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 SLF1Q9BQI6 1058 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 TMEM47Q9BQJ4 181 aa12.52□□□□□ -0.41
TPM1-229ENST00000561242 TRPM7Q96QT4 1865 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 TNPO2O14787 897 aaKnown RBP12.51□□□□□ -0.41
TPM1-229ENST00000561242 FOXN1O15353 648 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 NDUFB10O96000 172 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 GNRH1P01148 92 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 GUCY1A2P33402 732 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 HERVK_113P62684 666 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 AKAP17AQ02040 695 aaKnown RBP12.51□□□□□ -0.41
TPM1-229ENST00000561242 ANKRD1Q15327 319 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 TREML2Q5T2D2 321 aa12.51□□□□□ -0.41
TPM1-229ENST00000561242 CPLX2Q6PUV4 134 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms