RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	SHISA4	Q96DD7	197 aa		5.8	□□□□□ -1.48
SPG11-222	ENST00000560435	SGPP1	Q9BX95	441 aa		5.8	□□□□□ -1.48
SPG11-222	ENST00000560435	GPR160	Q9UJ42	338 aa		5.8	□□□□□ -1.48
SPG11-222	ENST00000560435	AGMO	Q6ZNB7	445 aa		5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	RETREG2	Q8NC44	543 aa		5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	CYB5D2	Q8WUJ1	264 aa		5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	XYLT2	Q9H1B5	865 aa		5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	ADAMTS20	P59510	1910 aa		5.79	□□□□□ -1.48
SPG11-222	ENST00000560435	HRK	O00198	91 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	SASH1	O94885	1247 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	KRTAP10-2	P60368	255 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	TEK	Q02763	1124 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	RNF141	Q8WVD5	230 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	FRMD6	Q96NE9	622 aa		5.78	□□□□□ -1.48
SPG11-222	ENST00000560435	OR14I1	A6ND48	311 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	PSPN	O60542	156 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	PI3	P19957	117 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	RPL6	Q02878	288 aa	Known RBP	5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	CCDC85B	Q15834	202 aa	Predicted RBP	5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	SKOR2	Q2VWA4	1001 aa	Predicted RBP	5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	LINC01599	Q8WXQ3	324 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	SIGLEC10	Q96LC7	697 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	MIR1-1HG	Q9H1L0	117 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	EBF1	Q9UH73	591 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	MBD1	Q9UIS9	605 aa	Predicted RBP	5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	IRAK3	Q9Y616	596 aa		5.77	□□□□□ -1.49
SPG11-222	ENST00000560435	RBM47	A0AV96	593 aa	Known RBP	5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	LIG3	P49916	1009 aa		5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	TSNAXIP1	Q2TAA8	658 aa		5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	DACT3	Q96B18	629 aa	Predicted RBP	5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	ASB16	Q96NS5	453 aa		5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	ZNF281	Q9Y2X9	895 aa		5.76	□□□□□ -1.49
SPG11-222	ENST00000560435	OTOL1	A6NHN0	477 aa	Predicted RBP	5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	NOTO	A8MTQ0	251 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	AFF3	P51826	1226 aa	Known RBP	5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	NFKB2	Q00653	900 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	ERICH6B	Q5W0A0	696 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	PRRT2	Q7Z6L0	340 aa	Predicted RBP	5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	NLRX1	Q86UT6	975 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	FAM13C	Q8NE31	585 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	PANK1	Q8TE04	598 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	G6PC3	Q9BUM1	346 aa		5.75	□□□□□ -1.49
SPG11-222	ENST00000560435	SLC22A31	A6NKX4	558 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	LRRN2	O75325	713 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	CELA3B	P08861	270 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	EIF4B	P23588	611 aa	Known RBP	5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	GALK1	P51570	392 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	YARS	P54577	528 aa	Known RBP	5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	SRSF3	P84103	164 aa	Known RBP	5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	ADGRF1	Q5T601	910 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	BORCS6	Q96GS4	357 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	ASPN	Q9BXN1	380 aa		5.74	□□□□□ -1.49
SPG11-222	ENST00000560435	SHISA3	A0PJX4	238 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	UPK3BL1	B0FP48	263 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	UPK3BL2	E5RIL1	263 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	PLCG1	P19174	1290 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	TFE3	P19532	575 aa	Predicted RBP	5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	TMEM201	Q5SNT2	666 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	KRTAP5-3	Q6L8H2	238 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	CRTAC1	Q9NQ79	661 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	SIRT5	Q9NXA8	310 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	CORIN	Q9Y5Q5	1042 aa		5.73	□□□□□ -1.49
SPG11-222	ENST00000560435	IRS4	O14654	1257 aa	Predicted RBP	5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	N4BP3	O15049	544 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	EFEMP2	O95967	443 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	ADRB1	P08588	477 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	GNA15	P30679	374 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	EPHB3	P54753	998 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	MAP3K11	Q16584	847 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	GGN	Q86UU5	652 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	SIRT2	Q8IXJ6	389 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	SP8	Q8IXZ3	490 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	SLFN12	Q8IYM2	578 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	KREMEN1	Q96MU8	473 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	CNTD2	Q9H8S5	307 aa		5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	5.72	□□□□□ -1.49
SPG11-222	ENST00000560435	NRDC	O43847	1150 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	LDHB	P07195	334 aa	Known RBP	5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	P4HB	P07237	508 aa	Known RBP	5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	VIPR1	P32241	457 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	KIR2DL1	P43626	348 aa	Predicted RBP	5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	KIR2DL2	P43627	348 aa	Predicted RBP	5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	YBX1	P67809	324 aa	Known RBP	5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	CLEC16A	Q2KHT3	1053 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	RNF111	Q6ZNA4	994 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	FEZF2	Q8TBJ5	459 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	GTF3C3	Q9Y5Q9	886 aa		5.71	□□□□□ -1.5
SPG11-222	ENST00000560435	USP2	O75604	605 aa	Predicted RBP	5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	BRD1	O95696	1058 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	RLBP1	P12271	317 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	TNNI2	P48788	182 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	OLFML2B	Q68BL8	750 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	DIEXF	Q68CQ4	756 aa	Known RBP	5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	ENOX1	Q8TC92	643 aa	Known RBP	5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	JARID2	Q92833	1246 aa	Predicted RBP	5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	MAP6	Q96JE9	813 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	TEPSIN	Q96N21	525 aa		5.7	□□□□□ -1.5
SPG11-222	ENST00000560435	PNLIP	P16233	465 aa		5.69	□□□□□ -1.5
SPG11-222	ENST00000560435	SLC14A2	Q15849	920 aa		5.69	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms