RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 AGTPBP1Q9UPW5 1226 aa25.65■■□□□ 1.7
SNX1-210ENST00000560260 VCAM1P19320 739 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 SEC23AQ15436 765 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 IQCA1Q86XH1 822 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 REM2Q8IYK8 340 aaPredicted RBP25.64■■□□□ 1.7
SNX1-210ENST00000560260 NEK1Q96PY6 1258 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 TMEM47Q9BQJ4 181 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 GPHNQ9NQX3 736 aaPredicted RBP25.64■■□□□ 1.7
SNX1-210ENST00000560260 TMOD4Q9NZQ9 345 aa25.64■■□□□ 1.7
SNX1-210ENST00000560260 CPA1P15085 419 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 KRT32Q14532 448 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 SPICE1Q8N0Z3 855 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 SENP2Q9HC62 589 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 PDHXO00330 501 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 PRC1O43663 620 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 NDUFB10O96000 172 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 MCCP23508 829 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 ANKS1AQ92625 1134 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 JAKMIP1Q96N16 626 aaKnown RBP25.63■■□□□ 1.69
SNX1-210ENST00000560260 UBAC1Q9BSL1 405 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 WBP1LQ9NX94 342 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 RNF186Q9NXI6 227 aa25.63■■□□□ 1.69
SNX1-210ENST00000560260 F5H6K3 240 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 EIF5BO60841 1220 aaKnown RBP25.62■■□□□ 1.69
SNX1-210ENST00000560260 TOP1P11387 765 aaKnown RBP25.62■■□□□ 1.69
SNX1-210ENST00000560260 KLRC3Q07444 240 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 PPP4R3BQ5MIZ7 849 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 DGKHQ86XP1 1220 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 GMCL1P1Q8NEA9 526 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 TCEANC2Q96MN5 208 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 NUP88Q99567 741 aaPredicted RBP25.62■■□□□ 1.69
SNX1-210ENST00000560260 LRRC2Q9BYS8 371 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 SYNPO2Q9UMS6 1093 aa25.62■■□□□ 1.69
SNX1-210ENST00000560260 MCM5P33992 734 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 MAP2K1Q02750 393 aaPredicted RBP25.61■■□□□ 1.69
SNX1-210ENST00000560260 IGDCC4Q8TDY8 1250 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 LPAR1Q92633 364 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 TTC14Q96N46 770 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 R3HDMLQ9H3Y0 253 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 GOPCQ9HD26 462 aa25.61■■□□□ 1.69
SNX1-210ENST00000560260 RLFQ13129 1914 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 PARP14Q460N5 1801 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 IFIT3O14879 490 aaKnown RBP25.6■■□□□ 1.69
SNX1-210ENST00000560260 RAD21O60216 631 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 EXOSC10Q01780 885 aaKnown RBP25.6■■□□□ 1.69
SNX1-210ENST00000560260 CCDC178Q5BJE1 867 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 CHMP4CQ96CF2 233 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 BACH2Q9BYV9 841 aa25.6■■□□□ 1.69
SNX1-210ENST00000560260 RPAP3Q9H6T3 665 aaPredicted RBP25.6■■□□□ 1.69
SNX1-210ENST00000560260 ZCCHC17Q9NP64 241 aaKnown RBP25.6■■□□□ 1.69
SNX1-210ENST00000560260 SH2B2O14492 632 aaPredicted RBP25.59■■□□□ 1.69
SNX1-210ENST00000560260 CYP2C8P10632 490 aa25.59■■□□□ 1.69
SNX1-210ENST00000560260 SLFN13Q68D06 897 aa25.59■■□□□ 1.69
SNX1-210ENST00000560260 LY9Q9HBG7 655 aa25.59■■□□□ 1.69
SNX1-210ENST00000560260 MTMR7Q9Y216 660 aa25.59■■□□□ 1.69
SNX1-210ENST00000560260 SLC45A1Q9Y2W3 748 aa25.59■■□□□ 1.69
SNX1-210ENST00000560260 ADGRA2Q96PE1 1338 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 WDR46O15213 610 aaKnown RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 TRPA1O75762 1119 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 HOXA7P31268 230 aaPredicted RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 CRHR2Q13324 411 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 TAF1CQ15572 869 aaPredicted RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 TMEM67Q5HYA8 995 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 FAM83BQ5T0W9 1011 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 IFIT1BQ5T764 474 aaKnown RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 DHX32Q7L7V1 743 aaKnown RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 IL17RAQ96F46 866 aa25.58■■□□□ 1.69
SNX1-210ENST00000560260 ASCC2Q9H1I8 757 aaPredicted RBP25.58■■□□□ 1.69
SNX1-210ENST00000560260 CASTP20810 708 aaKnown RBP25.57■■□□□ 1.68
SNX1-210ENST00000560260 OTUD7BQ6GQQ9 843 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 CATSPERGQ6ZRH7 1159 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 PNMA1Q8ND90 353 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 MTA3Q9BTC8 594 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 TSKSQ9UJT2 592 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 WDR19Q8NEZ3 1342 aa25.57■■□□□ 1.68
SNX1-210ENST00000560260 USP17L15C9J2P7 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L13C9JLJ4 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L11C9JVI0 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L18D6R9N7 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L22D6RA61 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L17D6RBQ6 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L19D6RCP7 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L20D6RJB6 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 CA12O43570 354 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 ALDH1A1P00352 501 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 RPS6KB1P23443 525 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 ANAPC15P60006 121 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 USP17L24Q0WX57 530 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 WTAPQ15007 396 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 BLOC1S2Q6QNY1 142 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 POTEEQ6S8J3 1075 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 GMCL1Q96IK5 515 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 TMEM87BQ96K49 555 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 CFHR5Q9BXR6 569 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 KAT14Q9H8E8 782 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 ZSWIM6Q9HCJ5 1215 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 SAGE1Q9NXZ1 904 aa25.56■■□□□ 1.68
SNX1-210ENST00000560260 A0A0G2JMZ2 1700 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 TBC1D8O95759 1140 aa25.55■■□□□ 1.68
SNX1-210ENST00000560260 HSPA1AP0DMV8 641 aaKnown RBP25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms