RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MYH6P13533 1939 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 PCNTO95613 3336 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 TNKSO95271 1327 aa10.83□□□□□ -0.68
LDLR-210ENST00000559340 CCDC69A6NI79 296 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 SLC10A3P09131 477 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 NOVP48745 357 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 EXOSC10Q01780 885 aaKnown RBP10.82□□□□□ -0.68
LDLR-210ENST00000559340 SREBF2Q12772 1141 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 ADCK5Q3MIX3 580 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 NFXL1Q6ZNB6 911 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 CATIPQ7Z7H3 387 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 RASAL3Q86YV0 1011 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 FBXL16Q8N461 479 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 PROCA1Q8NCQ7 364 aaPredicted RBP10.82□□□□□ -0.68
LDLR-210ENST00000559340 LPAR1Q92633 364 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 CHMP4CQ96CF2 233 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 CAPNS2Q96L46 248 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 ZKSCAN3Q9BRR0 538 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.82□□□□□ -0.68
LDLR-210ENST00000559340 ALDH8A1Q9H2A2 487 aaPredicted RBP10.82□□□□□ -0.68
LDLR-210ENST00000559340 IL17RBQ9NRM6 502 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 PDRG1Q9NUG6 133 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 TAF6LQ9Y6J9 622 aa10.82□□□□□ -0.68
LDLR-210ENST00000559340 TRIM75PA6NK02 468 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 IRF6O14896 467 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 RAD21O60216 631 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 ST18O60284 1047 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 CALM1P0DP23 149 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 CALM2P0DP24 149 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 CALM3P0DP25 149 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 MAP2K2P36507 400 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 NEK4P51957 841 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 JAG1P78504 1218 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 SEC23AQ15436 765 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 SH3D19Q5HYK7 790 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 RCSD1Q6JBY9 416 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 Q6ZUG5 572 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 ENAHQ8N8S7 591 aaPredicted RBP10.81□□□□□ -0.68
LDLR-210ENST00000559340 GMCL1P1Q8NEA9 526 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 IGDCC4Q8TDY8 1250 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 TMEM47Q9BQJ4 181 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 VCPKMTQ9H867 229 aa10.81□□□□□ -0.68
LDLR-210ENST00000559340 BAZ2BQ9UIF8 2168 aaKnown RBP10.8□□□□□ -0.68
LDLR-210ENST00000559340 CCL15-CCL14A0A0B4J2E2 113 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 A0A0G2JLL6 359 aaPredicted RBP10.8□□□□□ -0.68
LDLR-210ENST00000559340 F5H6K3 240 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 SH2B2O14492 632 aaPredicted RBP10.8□□□□□ -0.68
LDLR-210ENST00000559340 NMT2O60551 498 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 OSBPP22059 807 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 ANTXR2P58335 489 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 KLRC3Q07444 240 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 MTMR2Q13614 643 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 PPP2R5BQ15173 497 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 CCL15Q16663 113 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 SLFN13Q68D06 897 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 CYP4F22Q6NT55 531 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 GADL1Q6ZQY3 521 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 CHST3Q7LGC8 479 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 PRRT2Q7Z6L0 340 aaPredicted RBP10.8□□□□□ -0.68
LDLR-210ENST00000559340 SGMS1Q86VZ5 419 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 PNMA1Q8ND90 353 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 ACER1Q8TDN7 264 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 DCAF4Q8WV16 495 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 ABHD8Q96I13 439 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 C12orf42Q96LP6 360 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 ZCCHC17Q9NP64 241 aaKnown RBP10.8□□□□□ -0.68
LDLR-210ENST00000559340 SLC12A7Q9Y666 1083 aa10.8□□□□□ -0.68
LDLR-210ENST00000559340 TESPA1A2RU30 521 aaPredicted RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 FAM155AB1AL88 458 aaPredicted RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L15C9J2P7 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L13C9JLJ4 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L11C9JVI0 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L18D6R9N7 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L22D6RA61 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L17D6RBQ6 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L19D6RCP7 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L20D6RJB6 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 WDR46O15213 610 aaKnown RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 CA12O43570 354 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 DDAH1O94760 285 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 ALDH1A1P00352 501 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 KIF5BP33176 963 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 MCM2P49736 904 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 GNAQP50148 359 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 RCAN1P53805 252 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 HMGCS2P54868 508 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 USP17L24Q0WX57 530 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 GRM1Q13255 1194 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 SHROOM1Q2M3G4 852 aaPredicted RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 CCDC84Q86UT8 332 aaPredicted RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 SIAH1Q8IUQ4 282 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 CHURC1Q8WUH1 139 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 CNKSR2Q8WXI2 1034 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 GMCL1Q96IK5 515 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 MAP3K14Q99558 947 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 UPF3BQ9BZI7 483 aaKnown RBP10.79□□□□□ -0.68
LDLR-210ENST00000559340 LY9Q9HBG7 655 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 PNMA3Q9UL41 463 aa10.79□□□□□ -0.68
LDLR-210ENST00000559340 SLC45A1Q9Y2W3 748 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms