RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NASPP49321 788 aaPredicted RBP2.53□□□□□ -2
USP3-209ENST00000558925 EFEMP1Q12805 493 aa2.53□□□□□ -2
USP3-209ENST00000558925 AP3B2Q13367 1082 aa2.53□□□□□ -2
USP3-209ENST00000558925 GNL2Q13823 731 aaKnown RBP2.53□□□□□ -2
USP3-209ENST00000558925 SEPT6Q14141 434 aa2.53□□□□□ -2
USP3-209ENST00000558925 PUM1Q14671 1186 aaKnown RBP eCLIP2.53□□□□□ -2
USP3-209ENST00000558925 ZC3H12AQ5D1E8 599 aaKnown RBP2.53□□□□□ -2
USP3-209ENST00000558925 PCNX4Q63HM2 1172 aa2.53□□□□□ -2
USP3-209ENST00000558925 TTBK2Q6IQ55 1244 aa2.53□□□□□ -2
USP3-209ENST00000558925 GIMAP6Q6P9H5 292 aa2.53□□□□□ -2
USP3-209ENST00000558925 MPRIPQ6WCQ1 1025 aa2.53□□□□□ -2
USP3-209ENST00000558925 BNC2Q6ZN30 1099 aaPredicted RBP2.53□□□□□ -2
USP3-209ENST00000558925 CCDC81Q6ZN84 652 aa2.53□□□□□ -2
USP3-209ENST00000558925 SV2BQ7L1I2 683 aa2.53□□□□□ -2
USP3-209ENST00000558925 RELL1Q8IUW5 271 aa2.53□□□□□ -2
USP3-209ENST00000558925 KIAA0825Q8IV33 1275 aa2.53□□□□□ -2
USP3-209ENST00000558925 PHF6Q8IWS0 365 aaKnown RBP eCLIP2.53□□□□□ -2
USP3-209ENST00000558925 FBXO27Q8NI29 283 aa2.53□□□□□ -2
USP3-209ENST00000558925 GRIN3AQ8TCU5 1115 aa2.53□□□□□ -2
USP3-209ENST00000558925 NECAB3Q96P71 396 aaPredicted RBP2.53□□□□□ -2
USP3-209ENST00000558925 ALPK1Q96QP1 1244 aa2.53□□□□□ -2
USP3-209ENST00000558925 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.53□□□□□ -23e-6■□□□□ 10.1
USP3-209ENST00000558925 RSRP1Q9BUV0 290 aa2.53□□□□□ -2
USP3-209ENST00000558925 RNF32Q9H0A6 362 aa2.53□□□□□ -2
USP3-209ENST00000558925 ADAM7Q9H2U9 754 aa2.53□□□□□ -2
USP3-209ENST00000558925 GINM1Q9NU53 330 aa2.53□□□□□ -2
USP3-209ENST00000558925 GTF2IRD1Q9UHL9 959 aa2.53□□□□□ -2
USP3-209ENST00000558925 PPM1HQ9ULR3 514 aa2.53□□□□□ -2
USP3-209ENST00000558925 EFR3BQ9Y2G0 817 aa2.53□□□□□ -2
USP3-209ENST00000558925 KCTD3Q9Y597 815 aa2.53□□□□□ -2
USP3-209ENST00000558925 ST14Q9Y5Y6 855 aa2.53□□□□□ -2
USP3-209ENST00000558925 MRVI1Q9Y6F6 885 aa2.53□□□□□ -2
USP3-209ENST00000558925 H3BS24 57 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 F13A1P00488 732 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 GSTP1P09211 210 aaKnown RBP2.52□□□□□ -2.01
USP3-209ENST00000558925 SLFN14P0C7P3 912 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 XRCC5P13010 732 aaKnown RBP2.52□□□□□ -2.01
USP3-209ENST00000558925 BMP6P22004 513 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 CDK8P49336 464 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 PTPN11Q06124 597 aaPredicted RBP2.52□□□□□ -2.01
USP3-209ENST00000558925 CAMK2GQ13555 558 aaPredicted RBP2.52□□□□□ -2.01
USP3-209ENST00000558925 TIGD5Q53EQ6 642 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 SNAP47Q5SQN1 464 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 CDKAL1Q5VV42 579 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 TCERG1LQ5VWI1 586 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.52□□□□□ -2.01
USP3-209ENST00000558925 AGMOQ6ZNB7 445 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 TTC6Q86TZ1 520 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 ZDHHC14Q8IZN3 488 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 GOLM1Q8NBJ4 401 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 SYT8Q8NBV8 401 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 RASGRP4Q8TDF6 673 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 ANKRD24Q8TF21 1146 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 ZNF408Q9H9D4 720 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 PPP4R2Q9NY27 417 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 SLAMF8Q9P0V8 285 aa2.52□□□□□ -2.01
USP3-209ENST00000558925 GNAT3A8MTJ3 354 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 WASH4PA8MWX3 477 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 GREM1O60565 184 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 STK10O94804 968 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 SLITRK5O94991 958 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 HPXP02790 462 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 ETFBP38117 255 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 HK2P52789 917 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 LMNB2Q03252 620 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 PWP1Q13610 501 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 BMS1Q14692 1282 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 CCDC144BQ3MJ40 725 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 SEZ6Q53EL9 994 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 ZNF605Q86T29 641 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 SULF2Q8IWU5 870 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 FAM169BQ8N8A8 192 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 RNF214Q8ND24 703 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 HNRNPLLQ8WVV9 542 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 MYLIPQ8WY64 445 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 JARID2Q92833 1246 aaPredicted RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 GAL3ST3Q96A11 431 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 NT5C1AQ9BXI3 368 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 CEP44Q9C0F1 390 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 C19orf44Q9H6X5 657 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 CBX8Q9HC52 389 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 SSU72Q9NP77 194 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 KCNQ5Q9NR82 932 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 KRT82Q9NSB4 513 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 TMEM39AQ9NV64 488 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 CNOT6Q9ULM6 557 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 PPT2Q9UMR5 302 aa2.51□□□□□ -2.01
USP3-209ENST00000558925 SUPT16HQ9Y5B9 1047 aaKnown RBP2.51□□□□□ -2.01
USP3-209ENST00000558925 FAM221AA4D161 298 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 ESR1P03372 595 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 SSBP05455 408 aaKnown RBP eCLIP2.5□□□□□ -2.01
USP3-209ENST00000558925 PI3P19957 117 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 SOX9P48436 509 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 ERVK-24P63145 666 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 RBL2Q08999 1139 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 APOBRQ0VD83 1088 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 VMACQ2NL98 169 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 RPS26P11Q5JNZ5 115 aaPredicted RBP2.5□□□□□ -2.01
USP3-209ENST00000558925 PPM1JQ5JR12 505 aa2.5□□□□□ -2.01
USP3-209ENST00000558925 FAM196AQ6ZSG2 479 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms