RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZDHHC3Q9NYG2 299 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 ADAMTS1Q9UHI8 967 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 FOXD3Q9UJU5 478 aaPredicted RBP6.24□□□□□ -1.41
LDLR-209ENST00000558528 TNNQ9UQP3 1299 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 ZNF652Q9Y2D9 606 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 KDM2BQ8NHM5 1336 aa6.24□□□□□ -1.41
LDLR-209ENST00000558528 PRAMEF22A3QJZ6 481 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 A6NHS1 94 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 CCDC85CA6NKD9 419 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 GRM8O00222 908 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 EPB42P16452 691 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 ADD1P35611 737 aaKnown RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 SKOR1P84550 965 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 CENPCQ03188 943 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 PARP10Q53GL7 1025 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 GNASQ5JWF2 1037 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 SMC5Q8IY18 1101 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 RPUSD2Q8IZ73 545 aaKnown RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 ZNF296Q8WUU4 475 aaPredicted RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 CEP89Q96ST8 783 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 FEZ1Q99689 392 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 MYD88Q99836 296 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 SRRTQ9BXP5 876 aaKnown RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 DCTPP1Q9H773 170 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 C11orf16Q9NQ32 467 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 FANCLQ9NW38 375 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 CWC25Q9NXE8 425 aaPredicted RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 MSRB2Q9Y3D2 182 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 RGPD5Q99666 1765 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 TNRC6CQ9HCJ0 1690 aaKnown RBP6.23□□□□□ -1.41
LDLR-209ENST00000558528 CUL9Q8IWT3 2517 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 UTYO14607 1347 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 MAP3K15Q6ZN16 1313 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 CNTNAP4Q9C0A0 1308 aa6.23□□□□□ -1.41
LDLR-209ENST00000558528 BTAF1O14981 1849 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 NEURL1BA8MQ27 555 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 RPS6KA4O75676 772 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 EIF3JO75822 258 aaKnown RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 IGHDP01880 384 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 ANXA1P04083 346 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 PDGFRBP09619 1106 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 IDH3AP50213 366 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 EIF5P55010 431 aaKnown RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 GCKRQ14397 625 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 GRM2Q14416 872 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 PROSER3Q2NL68 480 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 KIAA0319Q5VV43 1072 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 PCNX4Q63HM2 1172 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 TMEM214Q6NUQ4 689 aaKnown RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 CEP85Q6P2H3 762 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 C16orf86Q6ZW13 317 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 PPP1R42Q7Z4L9 355 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 ERC1Q8IUD2 1116 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 OR6P1Q8NGX9 317 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 HNRNPLLQ8WVV9 542 aaKnown RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 MEIS3Q99687 375 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 ELP3Q9H9T3 547 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 TMEM260Q9NX78 707 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 TFCP2L1Q9NZI6 479 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 CCNL1Q9UK58 526 aaPredicted RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 RTCBQ9Y3I0 505 aaKnown RBP6.22□□□□□ -1.41
LDLR-209ENST00000558528 MRVI1Q9Y6F6 885 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 DLG5Q8TDM6 1919 aa6.22□□□□□ -1.41
LDLR-209ENST00000558528 RGPD2P0DJD1 1756 aa6.21□□□□□ -1.41
LDLR-209ENST00000558528 COL15A1P39059 1388 aa6.21□□□□□ -1.41
LDLR-209ENST00000558528 KCPQ6ZWJ8 1503 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 H7C1W4 665 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 GGCXP38435 758 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 CRKLP46109 303 aaKnown RBP6.21□□□□□ -1.42
LDLR-209ENST00000558528 LBX1P52954 281 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 MTX1Q13505 466 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 RASGRF1Q13972 1273 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 ANKRD45Q5TZF3 282 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 PRPF40BQ6NWY9 871 aaKnown RBP6.21□□□□□ -1.42
LDLR-209ENST00000558528 EXOC8Q8IYI6 725 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 ANKLE1Q8NAG6 615 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 FLAD1Q8NFF5 587 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 RELTQ969Z4 430 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 EAF1Q96JC9 268 aaPredicted RBP6.21□□□□□ -1.42
LDLR-209ENST00000558528 ISCA1Q9BUE6 129 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 BCS1LQ9Y276 419 aa6.21□□□□□ -1.42
LDLR-209ENST00000558528 LRRFIP2Q9Y608 721 aaKnown RBP6.21□□□□□ -1.42
LDLR-209ENST00000558528 SRGAP3O43295 1099 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 CD2BP2O95400 341 aaKnown RBP6.2□□□□□ -1.42
LDLR-209ENST00000558528 PCCAP05165 728 aaPredicted RBP6.2□□□□□ -1.42
LDLR-209ENST00000558528 IGKV5-2P06315 115 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 NBPF7P0C2Y1 421 aaPredicted RBP6.2□□□□□ -1.42
LDLR-209ENST00000558528 GPC1P35052 558 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 AMPD3Q01432 767 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 NUCB1Q02818 461 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 APOBRQ0VD83 1088 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 G3BP1Q13283 466 aaKnown RBP eCLIP6.2□□□□□ -1.42
LDLR-209ENST00000558528 TRAPPC3LQ5T215 181 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 INTS5Q6P9B9 1019 aaKnown RBP6.2□□□□□ -1.42
LDLR-209ENST00000558528 TTLL7Q6ZT98 887 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 CHD1LQ86WJ1 897 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 ZBTB38Q8NAP3 1195 aaPredicted RBP6.2□□□□□ -1.42
LDLR-209ENST00000558528 SSH3Q8TE77 659 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 ZNF516Q92618 1163 aa6.2□□□□□ -1.42
LDLR-209ENST00000558528 ANAPC16Q96DE5 110 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms