RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 MBD4O95243 580 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 UBXN2AP68543 259 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 SLC4A8Q2Y0W8 1093 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 C12orf60Q5U649 245 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 TICAM2Q86XR7 235 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 SDR42E1Q8WUS8 393 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 GCC1Q96CN9 775 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 BCL11AQ9H165 835 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 ARMT1Q9H993 441 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 EMILIN3Q9NT22 766 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 PDE4DIPQ5VU43 2346 aa12.16□□□□□ -0.46
USP3-207ENST00000558218 USP17L15C9J2P7 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L13C9JLJ4 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L11C9JVI0 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L18D6R9N7 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L22D6RA61 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L17D6RBQ6 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L19D6RCP7 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L20D6RJB6 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 GLRX3O76003 335 aaKnown RBP12.15□□□□□ -0.46
USP3-207ENST00000558218 FLT3LGP49771 235 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 HERVK_113P62684 666 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 PRKCZQ05513 592 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L24Q0WX57 530 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 HDAC1Q13547 482 aaPredicted RBP12.15□□□□□ -0.46
USP3-207ENST00000558218 RAB3GAP1Q15042 981 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 TMEM179Q6ZVK1 233 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 GPRC5AQ8NFJ5 357 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 SH3TC2Q8TF17 1288 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 P2RX7Q99572 595 aaKnown RBP12.15□□□□□ -0.46
USP3-207ENST00000558218 MYH7P12883 1935 aa12.15□□□□□ -0.46
USP3-207ENST00000558218 USP17L12C9JPN9 530 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 USP17L21D6R901 530 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 RNF113AO15541 343 aaKnown RBP12.14□□□□□ -0.47
USP3-207ENST00000558218 ADCY3O60266 1144 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 GJB1P08034 283 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 GNAT2P19087 354 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 EN2P19622 333 aaPredicted RBP12.14□□□□□ -0.47
USP3-207ENST00000558218 SBK1Q52WX2 424 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 LBX2Q6XYB7 198 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 CATSPERGQ6ZRH7 1159 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 APPBP2Q92624 585 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 STRBPQ96SI9 672 aaKnown RBP12.14□□□□□ -0.47
USP3-207ENST00000558218 FEZ1Q99689 392 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 PUS7LQ9H0K6 701 aaKnown RBP12.14□□□□□ -0.47
USP3-207ENST00000558218 RBPJLQ9UBG7 517 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 LHX6Q9UPM6 363 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 RABGAP1Q9Y3P9 1069 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 SLC4A4Q9Y6R1 1079 aa12.14□□□□□ -0.47
USP3-207ENST00000558218 DOCK3Q8IZD9 2030 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 PRKAB2O43741 272 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 MAPK4P31152 587 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 GUCY1A2P33402 732 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 SHROOM1Q2M3G4 852 aaPredicted RBP12.13□□□□□ -0.47
USP3-207ENST00000558218 PRPF38BQ5VTL8 546 aaKnown RBP12.13□□□□□ -0.47
USP3-207ENST00000558218 C16orf86Q6ZW13 317 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 LPAR1Q92633 364 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 SH2D4AQ9H788 454 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 HOXC10Q9NYD6 342 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 ARPP21Q9UBL0 812 aaPredicted RBP12.13□□□□□ -0.47
USP3-207ENST00000558218 BIN2Q9UBW5 565 aaPredicted RBP12.13□□□□□ -0.47
USP3-207ENST00000558218 GJD2Q9UKL4 321 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 GABRQQ9UN88 632 aa12.13□□□□□ -0.47
USP3-207ENST00000558218 NAV1Q8NEY1 1877 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 DDX60LQ5H9U9 1706 aaKnown RBP12.12□□□□□ -0.47
USP3-207ENST00000558218 ZSWIM8A7E2V4 1837 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 XRCC5P13010 732 aaKnown RBP12.12□□□□□ -0.47
USP3-207ENST00000558218 GJA8P48165 433 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 CDK8P49336 464 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 CCNA1P78396 465 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 SEPT2Q15019 361 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 CTR9Q6PD62 1173 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 TRMT44Q8IYL2 757 aaKnown RBP12.12□□□□□ -0.47
USP3-207ENST00000558218 CRBNQ96SW2 442 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 KANSL2Q9H9L4 492 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 ZNF287Q9HBT7 754 aa12.12□□□□□ -0.47
USP3-207ENST00000558218 GSG1L2A8MUP6 293 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 MPHOSPH10O00566 681 aaKnown RBP12.11□□□□□ -0.47
USP3-207ENST00000558218 CCL5P13501 91 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 VCAM1P19320 739 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 MX1P20591 662 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 ERVK-9P63128 1117 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 ERVK-24P63145 666 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 COG2Q14746 738 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 SLFNL1Q499Z3 407 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 ANKRD45Q5TZF3 282 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 CCAR1Q8IX12 1150 aaKnown RBP12.11□□□□□ -0.47
USP3-207ENST00000558218 PI4K2BQ8TCG2 481 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 ACER1Q8TDN7 264 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 PTCD2Q8WV60 388 aaKnown RBP12.11□□□□□ -0.47
USP3-207ENST00000558218 SOCS4Q8WXH5 440 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 OSBP2Q969R2 916 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 NUDT12Q9BQG2 462 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 RNF208Q9H0X6 261 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 RWDD1Q9H446 243 aaPredicted RBP12.11□□□□□ -0.47
USP3-207ENST00000558218 ARHGEF10LQ9HCE6 1279 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 STAP2Q9UGK3 403 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 TMX2Q9Y320 296 aa12.11□□□□□ -0.47
USP3-207ENST00000558218 PATL2C9JE40 543 aaKnown RBP12.1□□□□□ -0.47
USP3-207ENST00000558218 SGPL1O95470 568 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms