RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MYO5AQ9Y4I1 1855 aaKnown RBP13.98□□□□□ -0.17
LDLR-205ENST00000557933 NHSQ6T4R5 1651 aa13.98□□□□□ -0.17
LDLR-205ENST00000557933 GSG1L2A8MUP6 293 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 KRT9P35527 623 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 MATR3P43243 847 aaKnown RBP eCLIP13.97□□□□□ -0.17
LDLR-205ENST00000557933 DHX8Q14562 1220 aaKnown RBP13.97□□□□□ -0.17
LDLR-205ENST00000557933 CASP8Q14790 479 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 ADGRA1Q86SQ6 560 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 AK7Q96M32 723 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 DUSP10Q9Y6W6 482 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 PP2D1A8MPX8 630 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 NKRFO15226 690 aaKnown RBP eCLIP13.97□□□□□ -0.17
LDLR-205ENST00000557933 KRT31Q15323 416 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 AKNAD1Q5T1N1 836 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 ZNF654Q8IZM8 581 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 SMARCAL1Q9NZC9 954 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 ADD3Q9UEY8 706 aaKnown RBP13.97□□□□□ -0.17
LDLR-205ENST00000557933 ARFGEF2Q9Y6D5 1785 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 CCDC151A5D8V7 595 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 SARSP49591 514 aaKnown RBP13.97□□□□□ -0.17
LDLR-205ENST00000557933 KLK7P49862 253 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 KIF6Q6ZMV9 814 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 CRACR2BQ8N4Y2 399 aaPredicted RBP13.97□□□□□ -0.17
LDLR-205ENST00000557933 RASSF8Q8NHQ8 419 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 UBAC1Q9BSL1 405 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 FAM204AQ9H8W3 233 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 LRP2BPQ9P2M1 347 aa13.97□□□□□ -0.17
LDLR-205ENST00000557933 ERICH2A1L162 156 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 ANKRD18BA2A2Z9 1011 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 PPARAQ07869 468 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 LEKR1Q6ZMV7 388 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 SPATA5Q8NB90 893 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 FANCBQ8NB91 859 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 ISCA1Q9BUE6 129 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 RIC1Q4ADV7 1423 aa13.96□□□□□ -0.17
LDLR-205ENST00000557933 CTAGE15A4D2H0 777 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 TRIM75PA6NK02 468 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 PDE8BO95263 885 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 TPM1P09493 284 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 CTAGE8P0CG41 777 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 IFNAR1P17181 557 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 HSPA1LP34931 641 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 CYP27A1Q02318 531 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 PIK3AP1Q6ZUJ8 805 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 CTAGE6Q86UF2 777 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 CTAGE4Q8IX94 777 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 FBXL16Q8N461 479 aa13.96□□□□□ -0.18
LDLR-205ENST00000557933 SMCR8Q8TEV9 937 aaPredicted RBP13.96□□□□□ -0.18
LDLR-205ENST00000557933 MACROD2A1Z1Q3 448 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 ZPR1O75312 459 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 MYBL2P10244 700 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 UBXN1Q04323 297 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 PTGDRQ13258 359 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 RILPL1Q5EBL4 403 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 FCHSD1Q86WN1 690 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 TMEM87BQ96K49 555 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 RASSF4Q9H2L5 321 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 TNKSO95271 1327 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 TCRBV5S4A2TA0A5A2 114 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 ATP1A1P05023 1023 aaKnown RBP13.95□□□□□ -0.18
LDLR-205ENST00000557933 ACTN2P35609 894 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 MMS19Q96T76 1030 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 L1RE1Q9UN81 338 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 SRPRBQ9Y5M8 271 aaKnown RBP13.95□□□□□ -0.18
LDLR-205ENST00000557933 TJP1Q07157 1748 aa13.95□□□□□ -0.18
LDLR-205ENST00000557933 PPP1R3GB7ZBB8 358 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 HSP90B2PQ58FF3 399 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 FAM47AQ5JRC9 791 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 SPATA1Q5VX52 437 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 HDXQ7Z353 690 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 MTRQ99707 1265 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 EHD2Q9NZN4 543 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 ZBTB1Q9Y2K1 713 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 GOLGA6L9A6NEM1 432 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 PATL2C9JE40 543 aaKnown RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 MAP2K7O14733 419 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 PMS1P54277 932 aaKnown RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 CTSWP56202 376 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 DYNLL1P63167 89 aaKnown RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 SMIM5Q71RC9 77 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 SRLQ86TD4 932 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 ZBTB38Q8NAP3 1195 aaPredicted RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 NAPGQ99747 312 aaPredicted RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 ONECUT3O60422 494 aaPredicted RBP13.94□□□□□ -0.18
LDLR-205ENST00000557933 ADAMTS2O95450 1211 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 NLRP10Q86W26 655 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 ABHD10Q9NUJ1 306 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 TMOD3Q9NYL9 352 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 DACH1Q9UI36 760 aa13.94□□□□□ -0.18
LDLR-205ENST00000557933 NUP188Q5SRE5 1749 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 XDHP47989 1333 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 MYH8P13535 1937 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 EXOC5O00471 708 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 CXCR5P32302 372 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 ARHGAP25P42331 645 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 EZH2Q15910 746 aaKnown RBP13.93□□□□□ -0.18
LDLR-205ENST00000557933 FILIP1LQ4L180 1135 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 SGMS1Q86VZ5 419 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 HPS3Q969F9 1004 aa13.93□□□□□ -0.18
LDLR-205ENST00000557933 UIMC1Q96RL1 719 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms