RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 CFHR5Q9BXR6 569 aa17.52■□□□□ 0.4
VIPAS39-210ENST00000557466 STX8Q9UNK0 236 aa17.52■□□□□ 0.4
VIPAS39-210ENST00000557466 ADGRA2Q96PE1 1338 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 CYP2C8P10632 490 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 HSPA8P11142 646 aaKnown RBP17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 TRDNQ13061 729 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 PPP4R3BQ5MIZ7 849 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 RNF20Q5VTR2 975 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 RALYLQ86SE5 291 aaKnown RBP17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 SPICE1Q8N0Z3 855 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 NCOA7Q8NI08 942 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 LPAR1Q92633 364 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 MKL1Q969V6 931 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 PARK7Q99497 189 aaKnown RBP17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 GOPCQ9HD26 462 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 ZSWIM5Q9P217 1185 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 ZSWIM8A7E2V4 1837 aa17.51■□□□□ 0.39
VIPAS39-210ENST00000557466 EPB41L2O43491 1005 aaKnown RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 HOXA7P31268 230 aaPredicted RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 HSPA4P34932 840 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 PABPC4Q13310 644 aaKnown RBP eCLIP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 COL9A3Q14050 684 aaPredicted RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 C8orf34Q49A92 452 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 RCSD1Q6JBY9 416 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 MB21D2Q8IYB1 491 aaPredicted RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 RASEFQ8IZ41 740 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 ASCC2Q9H1I8 757 aaPredicted RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 RPAP3Q9H6T3 665 aaPredicted RBP17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 ZFYVE28Q9HCC9 887 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 SYNPO2Q9UMS6 1093 aa17.5■□□□□ 0.39
VIPAS39-210ENST00000557466 TNKSO95271 1327 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 COL11A1P12107 1806 aaPredicted RBP17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 RAD21O60216 631 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 NDUFB10O96000 172 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 CTCFP49711 727 aaPredicted RBP17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 ANTXR2P58335 489 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 IQCA1Q86XH1 822 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 KCNB2Q92953 911 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 ZSCAN10Q96SZ4 725 aaPredicted RBP17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 USP26Q9BXU7 913 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 PNMA3Q9UL41 463 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 CASP8AP2Q9UKL3 1982 aa17.49■□□□□ 0.39
VIPAS39-210ENST00000557466 MGAMO43451 1857 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L15C9J2P7 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L13C9JLJ4 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L11C9JVI0 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L18D6R9N7 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L22D6RA61 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L17D6RBQ6 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L19D6RCP7 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L20D6RJB6 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 F5H6K3 240 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 WDR46O15213 610 aaKnown RBP17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 TOP1P11387 765 aaKnown RBP17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 OSBPP22059 807 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 IRX3P78415 501 aaPredicted RBP17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 KLRC3Q07444 240 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 USP17L24Q0WX57 530 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 TSGA10IPQ3SY00 556 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 RASGRP2Q7LDG7 609 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 ENAHQ8N8S7 591 aaPredicted RBP17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 GMCL1P1Q8NEA9 526 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 NUP88Q99567 741 aaPredicted RBP17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 TMEM47Q9BQJ4 181 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 UBAC1Q9BSL1 405 aa17.48■□□□□ 0.39
VIPAS39-210ENST00000557466 TLR2O60603 784 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 SEC24BO95487 1268 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 ZKSCAN1P17029 563 aaPredicted RBP17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 LBX1P52954 281 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 ADCK5Q3MIX3 580 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 CCDC178Q5BJE1 867 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 FAM83BQ5T0W9 1011 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 CATSPERGQ6ZRH7 1159 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 CHST3Q7LGC8 479 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 SMCR8Q8TEV9 937 aaPredicted RBP17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 TTC14Q96N46 770 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 TANGO6Q9C0B7 1094 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 SNX14Q9Y5W7 946 aa17.47■□□□□ 0.39
VIPAS39-210ENST00000557466 GPR25O00155 361 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 SEC23AQ15436 765 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 SLFN13Q68D06 897 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 DGKHQ86XP1 1220 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 ANKS1AQ92625 1134 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 P2RX7Q99572 595 aaKnown RBP17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 CPA4Q9UI42 421 aa17.46■□□□□ 0.39
VIPAS39-210ENST00000557466 PRC1O43663 620 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 HERVK_113P62684 666 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 KRT32Q14532 448 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 NOM1Q5C9Z4 860 aaKnown RBP17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 C17orf99Q6UX52 265 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 CHMP4CQ96CF2 233 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 NEK1Q96PY6 1258 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 MTMR7Q9Y216 660 aa17.45■□□□□ 0.38
VIPAS39-210ENST00000557466 SPDYE16A6NNV3 312 aaPredicted RBP17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 IFIT3O14879 490 aaKnown RBP17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 FLOT1O75955 427 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 BCRP11274 1271 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 MCCP23508 829 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 MCM5P33992 734 aa17.44■□□□□ 0.38
VIPAS39-210ENST00000557466 POTEEQ6S8J3 1075 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms