RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	CYP2C8	P10632	490 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	HSPA8	P11142	646 aa	Known RBP	10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	CETP	P11597	493 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	HMGCS2	P54868	508 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	MTMR2	Q13614	643 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	ALX1	Q15699	326 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	GADL1	Q6ZQY3	521 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	TICAM2	Q86XR7	235 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	TBC1D10C	Q8IV04	446 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	MKNK2	Q9HBH9	465 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	SWAP70	Q9UH65	585 aa		10.5	□□□□□ -0.73
PRKCH-222	ENST00000556778	PDHX	O00330	501 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	NMT2	O60551	498 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	INHBE	P58166	350 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	CAP1	Q01518	475 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	SREBF2	Q12772	1141 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	CRHR2	Q13324	411 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	AMOTL1	Q8IY63	956 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	CHMP4C	Q96CF2	233 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	BEGAIN	Q9BUH8	593 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	WDR18	Q9BV38	432 aa		10.49	□□□□□ -0.73
PRKCH-222	ENST00000556778	EEF2	P13639	858 aa	Known RBP	10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	BACE1	P56817	501 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	TFAP4	Q01664	338 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	ATP2B2	Q01814	1243 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	COL9A3	Q14050	684 aa	Predicted RBP	10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	ESYT1	Q9BSJ8	1104 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	CABP5	Q9NP86	173 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	IL17RB	Q9NRM6	502 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	ANAPC4	Q9UJX5	808 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	ECM29	Q5VYK3	1845 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	TRPM7	Q96QT4	1865 aa		10.48	□□□□□ -0.73
PRKCH-222	ENST00000556778	SIPA1L1	O43166	1804 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	IGKV6D-41	A0A0C4DH26	115 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	USP17L10	C9JJH3	530 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	ZNF213	O14771	459 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	FGR	P09769	529 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	CTCF	P49711	727 aa	Predicted RBP	10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	SH3D19	Q5HYK7	790 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	RRP12	Q5JTH9	1297 aa	Known RBP	10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	COL13A1	Q5TAT6	717 aa	Predicted RBP	10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	POTEE	Q6S8J3	1075 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	TMEM179	Q6ZVK1	233 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	SPICE1	Q8N0Z3	855 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	DSCC1	Q9BVC3	393 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	KRTAP3-3	Q9BYR6	98 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	KRTAP3-2	Q9BYR7	98 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	LSG1	Q9H089	658 aa	Known RBP	10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	AS3MT	Q9HBK9	375 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	CPA4	Q9UI42	421 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	ROBO3	Q96MS0	1386 aa		10.47	□□□□□ -0.73
PRKCH-222	ENST00000556778	CA12	O43570	354 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	RANBP6	O60518	1105 aa	Known RBP	10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	CDC45	O75419	566 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	MFAP1	P55081	439 aa	Known RBP	10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	TAF1C	Q15572	869 aa	Predicted RBP	10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	ANKRD23	Q86SG2	305 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	RUFY2	Q8WXA3	655 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	MAP4K1	Q92918	833 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	CEP95	Q96GE4	821 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	CCDC17	Q96LX7	622 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	ZKSCAN3	Q9BRR0	538 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	TOMM22	Q9NS69	142 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	SAGE1	Q9NXZ1	904 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	CLIP2	Q9UDT6	1046 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	NEDD4	P46934	1319 aa		10.46	□□□□□ -0.73
PRKCH-222	ENST00000556778	GPR25	O00155	361 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	SLC3A2	P08195	630 aa	Known RBP	10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	CYP21A2	P08686	494 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	TSPY3	P0CV98	308 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	TSPY8	P0CW00	308 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	ICA1	Q05084	483 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	PDE4B	Q07343	736 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	AKNAD1	Q5T1N1	836 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	MFSD6	Q6ZSS7	791 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	STOX1	Q6ZVD7	989 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	FASTKD5	Q7L8L6	764 aa	Known RBP	10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	RASGRP2	Q7LDG7	609 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	NEDD1	Q8NHV4	660 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	NUP88	Q99567	741 aa	Predicted RBP	10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	P2RX7	Q99572	595 aa	Known RBP	10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	FEZ1	Q99689	392 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	KIAA1683	Q9H0B3	1180 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	KANSL2	Q9H9L4	492 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	GINM1	Q9NU53	330 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	MTMR4	Q9NYA4	1195 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	AGTPBP1	Q9UPW5	1226 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	TMX2	Q9Y320	296 aa		10.45	□□□□□ -0.74
PRKCH-222	ENST00000556778	DDX60L	Q5H9U9	1706 aa	Known RBP	10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	THSD7B	Q9C0I4	1608 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	RAD50	Q92878	1312 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778		B4E1Z4	1266 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	C19orf81	C9J6K1	198 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ORC4	O43929	436 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	RAD21	O60216	631 aa		10.44	□□□□□ -0.74
PRKCH-222	ENST00000556778	ALDH1A1	P00352	501 aa		10.44	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms