RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SHROOM1Q2M3G4 852 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-220ENST00000556486 MAP3K21Q5TCX8 1036 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 ZNF697Q5TEC3 545 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 ZNF280CQ8ND82 737 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 MAFAQ8NHW3 353 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-220ENST00000556486 CDX2Q99626 313 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-220ENST00000556486 MEIS3Q99687 375 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 GDPD2Q9HCC8 539 aa12.35□□□□□ -0.43
SCFD1-220ENST00000556486 COL2A1P02458 1487 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 GNAI3P08754 354 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 FOSBP53539 338 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 IRX3P78415 501 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 MTMR2Q13614 643 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 SLF2Q8IX21 1173 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 SPIRE2Q8WWL2 714 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 MYLIPQ8WY64 445 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 P2RX7Q99572 595 aaKnown RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 LBHD1Q9BQE6 289 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 PAGR1Q9BTK6 254 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 SENP6Q9GZR1 1112 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 PORCNQ9H237 461 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 PRDM6Q9NQX0 595 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 PA2G4Q9UQ80 394 aaKnown RBP12.34□□□□□ -0.43
SCFD1-220ENST00000556486 SIPA1L1O43166 1804 aa12.34□□□□□ -0.43
SCFD1-220ENST00000556486 MAP4K4O95819 1239 aaPredicted RBP12.33□□□□□ -0.44
SCFD1-220ENST00000556486 JAG1P78504 1218 aa12.33□□□□□ -0.44
SCFD1-220ENST00000556486 MVPQ14764 893 aaKnown RBP12.33□□□□□ -0.44
SCFD1-220ENST00000556486 SPTY2D1Q68D10 685 aaPredicted RBP12.33□□□□□ -0.44
SCFD1-220ENST00000556486 SPNS2Q8IVW8 549 aa12.33□□□□□ -0.44
SCFD1-220ENST00000556486 NUDT12Q9BQG2 462 aa12.33□□□□□ -0.44
SCFD1-220ENST00000556486 AKAP2Q9Y2D5 859 aa12.33□□□□□ -0.44
SCFD1-220ENST00000556486 MROH7-TTC4A0A0A0MT08 1334 aa12.33□□□□□ -0.44
SCFD1-220ENST00000556486 A0A1B0GUL7 405 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 SRGAP3O43295 1099 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 RHBDL3P58872 404 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 TIMM10P62072 90 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 MECOMQ03112 1051 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 PABPC4Q13310 644 aaKnown RBP eCLIP12.32□□□□□ -0.443e-10■■■□□ 16.3
SCFD1-220ENST00000556486 PDE3AQ14432 1141 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 TUSC1Q2TAM9 212 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 Q3C1V9 767 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 C9orf50Q5SZB4 431 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 FAM109BQ6ICB4 259 aaPredicted RBP12.32□□□□□ -0.44
SCFD1-220ENST00000556486 PI16Q6UXB8 463 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 ZNF384Q8TF68 577 aa12.32□□□□□ -0.44
SCFD1-220ENST00000556486 GPR75-ASB3A0A0A6YYF3 556 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 USP17L5A8MUK1 530 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 CNGA1P29973 690 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 CAP2P40123 477 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 HERVK_113P62684 666 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 SHHQ15465 462 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 TBC1D9Q6ZT07 1266 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 CCAR1Q8IX12 1150 aaKnown RBP12.31□□□□□ -0.44
SCFD1-220ENST00000556486 GPRC5AQ8NFJ5 357 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 ZDHHC16Q969W1 377 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 XAGE2Q96GT9 111 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 OSBPL5Q9H0X9 879 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-220ENST00000556486 SEMA6BQ9H3T3 888 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 CWC22Q9HCG8 908 aaKnown RBP12.31□□□□□ -0.44
SCFD1-220ENST00000556486 PRDM5Q9NQX1 630 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-220ENST00000556486 FLRT1Q9NZU1 646 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 MORF4L1Q9UBU8 362 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 ATP11BQ9Y2G3 1177 aa12.31□□□□□ -0.44
SCFD1-220ENST00000556486 MUC3AQ02505 3323 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 SPTLC1O15269 473 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 IPO8O15397 1037 aaKnown RBP12.3□□□□□ -0.44
SCFD1-220ENST00000556486 GDF11O95390 407 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 TRIM27P14373 513 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 ARID4AP29374 1257 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-220ENST00000556486 RTP1P59025 263 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 TFCP2Q12800 502 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 WDR78Q5VTH9 848 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 ANO1Q5XXA6 986 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 POTEEQ6S8J3 1075 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 GPR142Q7Z601 462 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 CALR3Q96L12 384 aaKnown RBP12.3□□□□□ -0.44
SCFD1-220ENST00000556486 TTYH1Q9H313 450 aaPredicted RBP12.3□□□□□ -0.44
SCFD1-220ENST00000556486 RBPJLQ9UBG7 517 aa12.3□□□□□ -0.44
SCFD1-220ENST00000556486 IGSF3O75054 1194 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 COL9A1P20849 921 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 RGS2P41220 211 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 PRSS12P56730 875 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 ERVK-9P63128 1117 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 ERVK-24P63145 666 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 ZYXQ15942 572 aaKnown RBP12.29□□□□□ -0.44
SCFD1-220ENST00000556486 MORN1Q5T089 497 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 GJC2Q5T442 439 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-220ENST00000556486 ATF7IPQ6VMQ6 1270 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 SOCS4Q8WXH5 440 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 USP6NLQ92738 828 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 APBA2Q99767 749 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 PRM3Q9NNZ6 103 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 TMOD4Q9NZQ9 345 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 HMG20BQ9P0W2 317 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 PRKAG2Q9UGJ0 569 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-220ENST00000556486 CDK5RAP2Q96SN8 1893 aa12.29□□□□□ -0.44
SCFD1-220ENST00000556486 GNAI2P04899 355 aa12.28□□□□□ -0.44
SCFD1-220ENST00000556486 XRCC5P13010 732 aaKnown RBP12.28□□□□□ -0.44
SCFD1-220ENST00000556486 FOSL2P15408 326 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms