RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-238ENST00000556288 BHLHE41Q9C0J9 482 aaPredicted RBP6.12□□□□□ -1.43
ATXN3-238ENST00000556288 PNNQ9H307 717 aaKnown RBP6.12□□□□□ -1.43
ATXN3-238ENST00000556288 TFCP2L1Q9NZI6 479 aa6.12□□□□□ -1.43
ATXN3-238ENST00000556288 CCNL1Q9UK58 526 aaPredicted RBP6.12□□□□□ -1.43
ATXN3-238ENST00000556288 TOGARAM1Q9Y4F4 1720 aa6.12□□□□□ -1.43
ATXN3-238ENST00000556288 TUBGCP6Q96RT7 1819 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 MYBBP1AQ9BQG0 1328 aaKnown RBP6.11□□□□□ -1.43
ATXN3-238ENST00000556288 MAPK8IP3Q9UPT6 1336 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 GNAT3A8MTJ3 354 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 METTL12A8MUP2 240 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 ERVV-2B6SEH9 535 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 SPATA31C1P0DKV0 1188 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 ERCC3P19447 782 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 EPHA1P21709 976 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 TEFQ10587 303 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 COL19A1Q14993 1142 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 AKAP4Q5JQC9 854 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 FAM117BQ6P1L5 589 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 ALYREFQ86V81 257 aaKnown RBP6.11□□□□□ -1.43
ATXN3-238ENST00000556288 NPAS4Q8IUM7 802 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 CCNJLQ8IV13 435 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 DTWD1Q8N5C7 304 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 SMARCC1Q92922 1105 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-238ENST00000556288 TCF12Q99081 682 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 PPP4R2Q9NY27 417 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 PPP1R1BQ9UD71 204 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-238ENST00000556288 ASAP1Q9ULH1 1129 aa6.11□□□□□ -1.43
ATXN3-238ENST00000556288 C5P01031 1676 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 A0A096LPE4 126 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 A0A1W2PPZ6 126 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 RNMTO43148 476 aaKnown RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 DEAF1O75398 565 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 ELNP15502 786 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 GRIA4P48058 902 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 MFAP1P55081 439 aaKnown RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 SLC39A6Q13433 755 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 DCTN1Q14203 1278 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 GRM2Q14416 872 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 GRIK4Q16099 956 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 SPRED3Q2MJR0 410 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 ZMYM1Q5SVZ6 1142 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 FBXO11Q86XK2 927 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 FMR1NBQ8N0W7 255 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 FBF1Q8TES7 1133 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 PRKRIP1Q9H875 184 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 SOX13Q9UN79 622 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 LAS1LQ9Y4W2 734 aaKnown RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 RGPD3A6NKT7 1758 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-238ENST00000556288 RGPD4Q7Z3J3 1758 aa6.1□□□□□ -1.43
ATXN3-238ENST00000556288 MYH14Q7Z406 1995 aaKnown RBP6.09□□□□□ -1.43
ATXN3-238ENST00000556288 PARD3Q8TEW0 1356 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 H3BRJ5 948 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 FSCN2O14926 492 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 ZBTB7AO95365 584 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 SETDB1Q15047 1291 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 SLC15A2Q16348 729 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 NXPE4Q6UWF7 544 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 MCM10Q7L590 875 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 MAP4K3Q8IVH8 894 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 TTC5Q8N0Z6 440 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 BCO2Q9BYV7 579 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 ATG3Q9NT62 314 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 MIS18AQ9NYP9 233 aa6.09□□□□□ -1.43
ATXN3-238ENST00000556288 RRP7AQ9Y3A4 280 aaKnown RBP6.09□□□□□ -1.43
ATXN3-238ENST00000556288 PALLDQ8WX93 1383 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 TMEM238LA0A1B0GVL6 79 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 PRPF40AO75400 957 aaKnown RBP6.08□□□□□ -1.44
ATXN3-238ENST00000556288 RIPK4P57078 832 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 FGD1P98174 961 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 IKBKEQ14164 716 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SMIM5Q71RC9 77 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 VN1R5Q7Z5H4 357 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 FAM9BQ8IZU0 186 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 GLIS3Q8NEA6 775 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SLC7A3Q8WY07 619 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 PDGFDQ9GZP0 370 aaPredicted RBP6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SLC52A2Q9HAB3 445 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SRA1Q9HD15 236 aaKnown RBP6.08□□□□□ -1.44
ATXN3-238ENST00000556288 MRS2Q9HD23 443 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SEC31BQ9NQW1 1179 aa6.08□□□□□ -1.44
ATXN3-238ENST00000556288 SIPA1L3O60292 1781 aaPredicted RBP6.08□□□□□ -1.44
ATXN3-238ENST00000556288 COL3A1P02461 1466 aaPredicted RBP6.08□□□□□ -1.44
ATXN3-238ENST00000556288 UBR3Q6ZT12 1888 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 HMGB2P26583 209 aaKnown RBP6.07□□□□□ -1.44
ATXN3-238ENST00000556288 ARL4DP49703 201 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 FCGRTP55899 365 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 CCDC184Q52MB2 194 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 PRPF40BQ6NWY9 871 aaKnown RBP6.07□□□□□ -1.44
ATXN3-238ENST00000556288 SHISA2Q6UWI4 295 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 DTHD1Q6ZMT9 781 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 NPM2Q86SE8 214 aaKnown RBP6.07□□□□□ -1.44
ATXN3-238ENST00000556288 GALNT11Q8NCW6 608 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 IL17REQ8NFR9 667 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 NACC1Q96RE7 527 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 DUSP9Q99956 384 aaKnown RBP6.07□□□□□ -1.44
ATXN3-238ENST00000556288 SPON1Q9HCB6 807 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 ABCB6Q9NP58 842 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 BCL9O00512 1426 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 NCAPD2Q15021 1401 aa6.07□□□□□ -1.44
ATXN3-238ENST00000556288 KDRP35968 1356 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms