RNA–Protein interactions for RNA: ENST00000556098.1

CHGA-205, Transcript of chromogranin A, humanhuman

TSL 3

Gene CHGA, Length 638 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-205ENST00000556098 NSUN4Q96CB9 384 aaKnown RBP13.19□□□□□ -0.3
CHGA-205ENST00000556098 BCL11AQ9H165 835 aa13.19□□□□□ -0.3
CHGA-205ENST00000556098 PI4KBQ9UBF8 816 aa13.19□□□□□ -0.3
CHGA-205ENST00000556098 HERC5Q9UII4 1024 aaKnown RBP13.19□□□□□ -0.3
CHGA-205ENST00000556098 DNAH12Q6ZR08 3092 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 USP17L10C9JJH3 530 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 ZBTB22O15209 634 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 ST18O60284 1047 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 JAG1P78504 1218 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 MFSD14CQ5VZR4 134 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 ANO1Q5XXA6 986 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 NAA16Q6N069 864 aaPredicted RBP13.18□□□□□ -0.3
CHGA-205ENST00000556098 FSD1Q9BTV5 496 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 RBPJLQ9UBG7 517 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 PALD1Q9ULE6 856 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.18□□□□□ -0.3
CHGA-205ENST00000556098 GBF1Q92538 1859 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 SMCHD1A6NHR9 2005 aa13.18□□□□□ -0.3
CHGA-205ENST00000556098 PDS5AQ29RF7 1337 aaKnown RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 C19orf81C9J6K1 198 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 BAG3O95817 575 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 ZFYP08048 801 aaPredicted RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 UQCRFS1P1P0C7P4 283 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 COL6A1P12109 1028 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 XRCC5P13010 732 aaKnown RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 RTP1P59025 263 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 ATP2B2Q01814 1243 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 MAP2K5Q13163 448 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 TTC39AQ5SRH9 613 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 GJC2Q5T442 439 aaPredicted RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 LHX8Q68G74 356 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 KBTBD3Q8NAB2 608 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 MYLIPQ8WY64 445 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 EDC3Q96F86 508 aaKnown RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 DBNDD2Q9BQY9 259 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 WDR18Q9BV38 432 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 ANO2Q9NQ90 1003 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 TLR7Q9NYK1 1049 aaKnown RBP13.17□□□□□ -0.3
CHGA-205ENST00000556098 ZBTB21Q9ULJ3 1066 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 IVNS1ABPQ9Y6Y0 642 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 PARP14Q460N5 1801 aa13.17□□□□□ -0.3
CHGA-205ENST00000556098 FLT1P17948 1338 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 IGSF3O75054 1194 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 HLA-DOAP06340 250 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 MCAMP43121 646 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 TTF1Q15361 905 aaPredicted RBP13.16□□□□□ -0.3
CHGA-205ENST00000556098 USP17L2Q6R6M4 530 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
CHGA-205ENST00000556098 MAFAQ8NHW3 353 aaPredicted RBP13.16□□□□□ -0.3
CHGA-205ENST00000556098 BOLA2Q9H3K6 86 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 FLRT1Q9NZU1 646 aa13.16□□□□□ -0.3
CHGA-205ENST00000556098 DDX20Q9UHI6 824 aaKnown RBP13.16□□□□□ -0.3
CHGA-205ENST00000556098 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
CHGA-205ENST00000556098 A0A0C4DFX4 3053 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 NPM3O75607 178 aaKnown RBP13.15□□□□□ -0.3
CHGA-205ENST00000556098 GH2P01242 217 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 HOXA7P31268 230 aaPredicted RBP13.15□□□□□ -0.3
CHGA-205ENST00000556098 CYP2C19P33261 490 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 HSPA4P34932 840 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 CCNA1P78396 465 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 RAB3GAP1Q15042 981 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 SHHQ15465 462 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 MORN1Q5T089 497 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 CDX2Q99626 313 aaPredicted RBP13.15□□□□□ -0.3
CHGA-205ENST00000556098 KIF2CQ99661 725 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 DHX36Q9H2U1 1008 aaKnown RBP13.15□□□□□ -0.3
CHGA-205ENST00000556098 DNAJC18Q9H819 358 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 EMILIN3Q9NT22 766 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 PAG1Q9NWQ8 432 aa13.15□□□□□ -0.3
CHGA-205ENST00000556098 CUL9Q8IWT3 2517 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 ZNF236Q9UL36 1845 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 KBTBD13C9JR72 458 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 POTEB2H3BUK9 544 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 MAP4K4O95819 1239 aaPredicted RBP13.14□□□□□ -0.31
CHGA-205ENST00000556098 FOSL2P15408 326 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 PLCG2P16885 1265 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 USP5P45974 858 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 DYNLL1P63167 89 aaKnown RBP13.14□□□□□ -0.31
CHGA-205ENST00000556098 C9orf50Q5SZB4 431 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 RNF20Q5VTR2 975 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 ZSCAN25Q6NSZ9 544 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 TMED8Q6PL24 325 aaPredicted RBP13.14□□□□□ -0.31
CHGA-205ENST00000556098 GTF3C2Q8WUA4 911 aaPredicted RBP13.14□□□□□ -0.31
CHGA-205ENST00000556098 HELLSQ9NRZ9 838 aa13.14□□□□□ -0.31
CHGA-205ENST00000556098 CCDC171Q6TFL3 1326 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 A0A0G2JMZ2 1700 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 LAMA4Q16363 1823 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L15C9J2P7 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L13C9JLJ4 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L11C9JVI0 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L18D6R9N7 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L22D6RA61 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L17D6RBQ6 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L19D6RCP7 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L20D6RJB6 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 ARID4AP29374 1257 aaPredicted RBP13.13□□□□□ -0.31
CHGA-205ENST00000556098 USP17L24Q0WX57 530 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 CWC27Q6UX04 472 aaKnown RBP13.13□□□□□ -0.31
CHGA-205ENST00000556098 ADGRA1Q86SQ6 560 aa13.13□□□□□ -0.31
CHGA-205ENST00000556098 DPP9Q86TI2 863 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms