RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 MPHOSPH10O00566 681 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 FOXP2O15409 715 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 HMGCRP04035 888 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 CDK8P49336 464 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L24Q0WX57 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 MORN1Q5T089 497 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 MAP3K21Q5TCX8 1036 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 GTF3C2Q8WUA4 911 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 APPBP2Q92624 585 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 YTHDC1Q96MU7 727 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 CRISPLD2Q9H0B8 497 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 CABP5Q9NP86 173 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 BIN2Q9UBW5 565 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 FRMPD3Q5JV73 1810 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 RNF113AO15541 343 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 GPAA1O43292 621 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 FARP2O94887 1054 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 SGPL1O95470 568 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 PRKAR2AP13861 404 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 CYP2B6P20813 491 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 ICA1Q05084 483 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 CCL14Q16627 93 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 ZSCAN25Q6NSZ9 544 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 DIS3LQ8TF46 1054 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 SOCS4Q8WXH5 440 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 DEFB118Q96PH6 123 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 SEC62Q99442 399 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 ARPP21Q9UBL0 812 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 RABGAP1Q9Y3P9 1069 aa11.19□□□□□ -0.62
VIPAS39-207ENST00000555854 RASA1P20936 1047 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 MAPK4P31152 587 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 SBK1Q52WX2 424 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 PLEKHH3Q7Z736 793 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 SPICE1Q8N0Z3 855 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 NKX2-3Q8TAU0 364 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 GPATCH3Q96I76 525 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 VCPKMTQ9H867 229 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 FLRT1Q9NZU1 646 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 TMX2Q9Y320 296 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 TRIOBPQ9H2D6 2365 aa11.18□□□□□ -0.62
VIPAS39-207ENST00000555854 COL11A1P12107 1806 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 IGKV6D-41A0A0C4DH26 115 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 IGHA2P01877 340 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 XRCC5P13010 732 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 MX1P20591 662 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 HDAC1Q13547 482 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 GRB14Q14449 540 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 APBA2Q99767 749 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 NUDT12Q9BQG2 462 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 SSUH2Q9Y2M2 353 aa11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 LAMA2P24043 3122 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-207ENST00000555854 H0YGN5 161 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 GLRX3O76003 335 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 ZFYP08048 801 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 EEF2P13639 858 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 ZKSCAN1P17029 563 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 CACNB2Q08289 660 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 MAP2K5Q13163 448 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 ZMYM1Q5SVZ6 1142 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 GIMAP6Q6P9H5 292 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 NPLOC4Q8TAT6 608 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 ATG4CQ96DT6 458 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 CCDC17Q96LX7 622 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 MOV10L1Q9BXT6 1211 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 TANGO6Q9C0B7 1094 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 FBXO28Q9NVF7 368 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 TACC3Q9Y6A5 838 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 PLIN4Q96Q06 1357 aa11.16□□□□□ -0.62
VIPAS39-207ENST00000555854 RPTORQ8N122 1335 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 WDR46O15213 610 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 HOXC6P09630 235 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 PTPREP23469 700 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 CCND3P30281 292 aaPredicted RBP11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 RGS2P41220 211 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 HABP4Q5JVS0 413 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 CCDC129Q6ZRS4 1044 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 STK11IPQ8N1F8 1099 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 REPS2Q8NFH8 660 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 LPAR1Q92633 364 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 FSD1Q9BTV5 496 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 ARHGEF10LQ9HCE6 1279 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 STAP2Q9UGK3 403 aa11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 COLQQ9Y215 455 aaPredicted RBP11.15□□□□□ -0.62
VIPAS39-207ENST00000555854 PFASO15067 1338 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 ERC2O15083 957 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 PRDM1O75626 825 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 FLOT1O75955 427 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 COG2Q14746 738 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 LHX8Q68G74 356 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 IFNL3Q8IZI9 196 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 TRPV1Q8NER1 839 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 PAWRQ96IZ0 340 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 SPATC1LQ9H0A9 340 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 PRO3102Q9H379 93 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 KANSL2Q9H9L4 492 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 HMX1Q9NP08 348 aaPredicted RBP11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 PCDH10Q9P2E7 1040 aa11.14□□□□□ -0.63
VIPAS39-207ENST00000555854 OGDHLQ9ULD0 1010 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms