RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CENPQQ7L2Z9 268 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-219ENST00000555563 MYPNQ86TC9 1320 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 SPICE1Q8N0Z3 855 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 LPAR1Q92633 364 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 VCPKMTQ9H867 229 aa16.32■□□□□ 0.2
SHMT2-219ENST00000555563 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHMT2-219ENST00000555563 PARP14Q460N5 1801 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 TNPO2O14787 897 aaKnown RBP16.31■□□□□ 0.2
SHMT2-219ENST00000555563 FGAP02671 866 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 HOXD10P28358 340 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 MFAP1P55081 439 aaKnown RBP16.31■□□□□ 0.2
SHMT2-219ENST00000555563 PRMT2P55345 433 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 ZNF444Q8N0Y2 327 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-219ENST00000555563 GTF3C2Q8WUA4 911 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-219ENST00000555563 TANGO6Q9C0B7 1094 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 IL25Q9H293 177 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 RBPJLQ9UBG7 517 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 ANAPC4Q9UJX5 808 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 TACC3Q9Y6A5 838 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 RLFQ13129 1914 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 MYH4Q9Y623 1939 aa16.31■□□□□ 0.2
SHMT2-219ENST00000555563 SPDYE16A6NNV3 312 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-219ENST00000555563 TSPY3P0CV98 308 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 TSPY8P0CW00 308 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 SLC9C1Q4G0N8 1177 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 FAM47AQ5JRC9 791 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 GPRC5AQ8NFJ5 357 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 ARMC5Q96C12 935 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 CEP95Q96GE4 821 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 PAGR1Q9BTK6 254 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 INCENPQ9NQS7 918 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 GABRQQ9UN88 632 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 HTTP42858 3142 aa16.3■□□□□ 0.2
SHMT2-219ENST00000555563 WDR46O15213 610 aaKnown RBP16.29■□□□□ 0.2
SHMT2-219ENST00000555563 HAND2P61296 217 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 ERVK-9P63128 1117 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 ERVK-24P63145 666 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 TFAP4Q01664 338 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 PRPF38BQ5VTL8 546 aaKnown RBP16.29■□□□□ 0.2
SHMT2-219ENST00000555563 LBX2Q6XYB7 198 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 SKAP1Q86WV1 359 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 NEDD1Q8NHV4 660 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 RAET1EQ8TD07 263 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 NBPF3Q9H094 633 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 GOPCQ9HD26 462 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 NYAP2Q9P242 653 aa16.29■□□□□ 0.2
SHMT2-219ENST00000555563 RBBP6Q7Z6E9 1792 aaKnown RBP16.28■□□□□ 0.2
SHMT2-219ENST00000555563 RAD21O60216 631 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 CNMDO75829 334 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 FLT3LGP49771 235 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 TBC1D10CQ8IV04 446 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 SH3TC2Q8TF17 1288 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 COA7Q96BR5 231 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 MTMR4Q9NYA4 1195 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 RABGAP1Q9Y3P9 1069 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 PLXNB2O15031 1838 aa16.28■□□□□ 0.2
SHMT2-219ENST00000555563 RAD50Q92878 1312 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 TSPY2A6NKD2 308 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 ORC4O43929 436 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 FLOT1O75955 427 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 TTLL1O95922 423 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 NDUFB10O96000 172 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 NEFLP07196 543 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 FGRP09769 529 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 CHMLP26374 656 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 COG2Q14746 738 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 Q3C1V9 767 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 LRRC47Q8N1G4 583 aaKnown RBP16.27■□□□□ 0.2
SHMT2-219ENST00000555563 ZNF333Q96JL9 665 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 PORCNQ9H237 461 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 BTBD7Q9P203 1132 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 CLIP2Q9UDT6 1046 aa16.27■□□□□ 0.2
SHMT2-219ENST00000555563 FAM83BQ5T0W9 1011 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 ATG4CQ96DT6 458 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 CCDC136Q96JN2 1154 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 NUP88Q99567 741 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-219ENST00000555563 DSCC1Q9BVC3 393 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 TOMM22Q9NS69 142 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 DOCK3Q8IZD9 2030 aa16.26■□□□□ 0.19
SHMT2-219ENST00000555563 F5H6K3 240 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 RANBP6O60518 1105 aaKnown RBP16.25■□□□□ 0.19
SHMT2-219ENST00000555563 NMT2O60551 498 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 MAPK4P31152 587 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 GRK4P32298 578 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 DSG3P32926 999 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 KLRC3Q07444 240 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 IRF5Q13568 498 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 RRP12Q5JTH9 1297 aaKnown RBP16.25■□□□□ 0.19
SHMT2-219ENST00000555563 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-219ENST00000555563 NBPF11Q86T75 865 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 STAG1Q8WVM7 1258 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 IL17RBQ9NRM6 502 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 FBXO28Q9NVF7 368 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 HOXC10Q9NYD6 342 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 SYNPO2Q9UMS6 1093 aa16.25■□□□□ 0.19
SHMT2-219ENST00000555563 NEDD4P46934 1319 aa16.24■□□□□ 0.19
SHMT2-219ENST00000555563 MYCP01106 439 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-219ENST00000555563 CCNA1P78396 465 aa16.24■□□□□ 0.19
SHMT2-219ENST00000555563 AKNAD1Q5T1N1 836 aa16.24■□□□□ 0.19
SHMT2-219ENST00000555563 GPR142Q7Z601 462 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms