RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 ANKS1AQ92625 1134 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 ZSCAN31Q96LW9 406 aaPredicted RBP12.6□□□□□ -0.39
TDP1-211ENST00000555178 NUP88Q99567 741 aaPredicted RBP12.6□□□□□ -0.39
TDP1-211ENST00000555178 CCDC69A6NI79 296 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 USP17L5A8MUK1 530 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 PFKFB2O60825 505 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 GOLGA8HP0CJ92 632 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 ADD1P35611 737 aaKnown RBP12.6□□□□□ -0.39
TDP1-211ENST00000555178 NBPF11Q86T75 865 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 SPICE1Q8N0Z3 855 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 PNMA1Q8ND90 353 aa12.6□□□□□ -0.39
TDP1-211ENST00000555178 PARP14Q460N5 1801 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 PPP1R12BO60237 982 aaPredicted RBP12.59□□□□□ -0.39
TDP1-211ENST00000555178 CTDNEP1O95476 244 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 LDLRAD1Q5T700 205 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 DGKHQ86XP1 1220 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 NUP133Q8WUM0 1156 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 ZNF274Q96GC6 653 aaPredicted RBP12.59□□□□□ -0.39
TDP1-211ENST00000555178 KANSL2Q9H9L4 492 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 CABP5Q9NP86 173 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 SLC12A7Q9Y666 1083 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 ZHX2Q9Y6X8 837 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 RLFQ13129 1914 aa12.59□□□□□ -0.39
TDP1-211ENST00000555178 ZBTB43O43298 467 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 TTLL1O95922 423 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 ASNSP08243 561 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 DDIT3P35638 169 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 SPP2Q13103 211 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 PKP1Q13835 747 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 MAP3K11Q16584 847 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 USP17L2Q6R6M4 530 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 IL27Q8NEV9 243 aa12.58□□□□□ -0.39
TDP1-211ENST00000555178 GBA2Q9HCG7 927 aaPredicted RBP12.58□□□□□ -0.39
TDP1-211ENST00000555178 FRMPD2Q68DX3 1309 aaPredicted RBP12.58□□□□□ -0.4
TDP1-211ENST00000555178 TRIM75PA6NK02 468 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 RAD21O60216 631 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 PLEKHA8P1O95397 391 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 TOP1P11387 765 aaKnown RBP12.58□□□□□ -0.4
TDP1-211ENST00000555178 METAP2P50579 478 aaKnown RBP eCLIP12.58□□□□□ -0.4
TDP1-211ENST00000555178 MKRN3Q13064 507 aaKnown RBP12.58□□□□□ -0.4
TDP1-211ENST00000555178 NOL9Q5SY16 702 aaKnown RBP12.58□□□□□ -0.4
TDP1-211ENST00000555178 TTBK2Q6IQ55 1244 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 CCDC82Q8N4S0 544 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 MKL1Q969V6 931 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 KAT14Q9H8E8 782 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 NYAP2Q9P242 653 aa12.58□□□□□ -0.4
TDP1-211ENST00000555178 hCG_1642624A0A1W2PR95 340 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 GOLGA8AA7E2F4 631 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 TOMM70O94826 608 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 NF2P35240 595 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 IREB2P48200 963 aaKnown RBP12.57□□□□□ -0.4
TDP1-211ENST00000555178 DDX11Q96FC9 970 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 OTUD5Q96G74 571 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 MTA3Q9BTC8 594 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 F5H6K3 240 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 NDUFB10O96000 172 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 KLRC3Q07444 240 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 MTMR2Q13614 643 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 KCTD1Q719H9 257 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 NSUN7Q8NE18 718 aaKnown RBP12.57□□□□□ -0.4
TDP1-211ENST00000555178 HOOK2Q96ED9 719 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 INTS4Q96HW7 963 aaKnown RBP12.57□□□□□ -0.4
TDP1-211ENST00000555178 EMILIN3Q9NT22 766 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 MAD2L2Q9UI95 211 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 TMX2Q9Y320 296 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 AFG3L2Q9Y4W6 797 aa12.57□□□□□ -0.4
TDP1-211ENST00000555178 COL11A1P12107 1806 aaPredicted RBP12.56□□□□□ -0.4
TDP1-211ENST00000555178 IRF6O14896 467 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 PDHBP11177 359 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 GJB2P29033 226 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 ANKRD13AQ8IZ07 590 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 SMC1BQ8NDV3 1235 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 UBA5Q9GZZ9 404 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 GPCPD1Q9NPB8 672 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 CEP350Q5VT06 3117 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 PTPDC1A2A3K4 754 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 SLC16A2P36021 539 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 HTRA3P83110 453 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 NTRK3Q16288 839 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 ARMC9Q7Z3E5 817 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 CATIPQ7Z7H3 387 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 SRBD1Q8N5C6 995 aaKnown RBP12.56□□□□□ -0.4
TDP1-211ENST00000555178 FANCBQ8NB91 859 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 PIBF1Q8WXW3 757 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 PHKBQ93100 1093 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 OPTNQ96CV9 577 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 PICK1Q9NRD5 415 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 SMC3Q9UQE7 1217 aa12.56□□□□□ -0.4
TDP1-211ENST00000555178 LOC285556D6RIA3 1793 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 CYTH3O43739 400 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 TAL1P17542 331 aaPredicted RBP12.55□□□□□ -0.4
TDP1-211ENST00000555178 FOSBP53539 338 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 HMGCS2P54868 508 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 SNAP25P60880 206 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 FUT2Q10981 343 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 RTN1Q16799 776 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 SLFN13Q68D06 897 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 TMTC2Q8N394 836 aa12.55□□□□□ -0.4
TDP1-211ENST00000555178 RBM46Q8TBY0 533 aaKnown RBP12.55□□□□□ -0.4
TDP1-211ENST00000555178 FBXO28Q9NVF7 368 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms