RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 KAT14Q9H8E8 782 aa11.96□□□□□ -0.49
SYNE2-215ENST00000554997 GPHNQ9NQX3 736 aaPredicted RBP11.96□□□□□ -0.49
SYNE2-215ENST00000554997 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.96□□□□□ -0.49
SYNE2-215ENST00000554997 PAPPA2Q9BXP8 1791 aa11.96□□□□□ -0.49
SYNE2-215ENST00000554997 LAMB1P07942 1786 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 CCDC69A6NI79 296 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 TRIM75PA6NK02 468 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 RASSF10A6NK89 507 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 GJA5P36382 358 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 TOB2Q14106 344 aaPredicted RBP11.95□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L2Q6R6M4 530 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 NFXL1Q6ZNB6 911 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 CLEC10AQ8IUN9 316 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 BRF1Q92994 677 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 SENP2Q9HC62 589 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 EMILIN3Q9NT22 766 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 LAMA4Q16363 1823 aa11.95□□□□□ -0.5
SYNE2-215ENST00000554997 ST18O60284 1047 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 GTF2A2P52657 109 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 AK2P54819 239 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 INHBEP58166 350 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 TROAPQ12815 778 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 SNAPC2Q13487 334 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 MTMR2Q13614 643 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 SYNE3Q6ZMZ3 975 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 FASTKD5Q7L8L6 764 aaKnown RBP11.94□□□□□ -0.5
SYNE2-215ENST00000554997 CATIPQ7Z7H3 387 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 RASAL3Q86YV0 1011 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 PNMA1Q8ND90 353 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 LPAR1Q92633 364 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 ZNF274Q96GC6 653 aaPredicted RBP11.94□□□□□ -0.5
SYNE2-215ENST00000554997 MS4A4AQ96JQ5 239 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 C12orf42Q96LP6 360 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 MAP3K14Q99558 947 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 FEZ1Q99689 392 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 VCPKMTQ9H867 229 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 GOPCQ9HD26 462 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 BRPF3Q9ULD4 1205 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 SLC12A7Q9Y666 1083 aa11.94□□□□□ -0.5
SYNE2-215ENST00000554997 A0A0G2JLL6 359 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-215ENST00000554997 FAM155AB1AL88 458 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-215ENST00000554997 SLC10A3P09131 477 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 CALM1P0DP23 149 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 CALM2P0DP24 149 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 CALM3P0DP25 149 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 CETPP11597 493 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 HSPA6P17066 643 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 MCM2P49736 904 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 HMGCS2P54868 508 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 APOBRQ0VD83 1088 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 PPP2R5BQ15173 497 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 SLFN13Q68D06 897 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 PRRT2Q7Z6L0 340 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-215ENST00000554997 LRRC47Q8N1G4 583 aaKnown RBP11.93□□□□□ -0.5
SYNE2-215ENST00000554997 PROCA1Q8NCQ7 364 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-215ENST00000554997 GMCL1Q96IK5 515 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 TMOD4Q9NZQ9 345 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 LIMCH1Q9UPQ0 1083 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 TRPM7Q96QT4 1865 aa11.93□□□□□ -0.5
SYNE2-215ENST00000554997 KLF18A0A0U1RQI7 1052 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 TESPA1A2RU30 521 aaPredicted RBP11.92□□□□□ -0.5
SYNE2-215ENST00000554997 MANSC4A6NHS7 340 aaPredicted RBP11.92□□□□□ -0.5
SYNE2-215ENST00000554997 NDUFB10O96000 172 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 SNHG28P0DPA3 235 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 PDIA3P30101 505 aaKnown RBP11.92□□□□□ -0.5
SYNE2-215ENST00000554997 RCAN1P53805 252 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 MOGSQ13724 837 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 KIAA1755Q5JYT7 1200 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 APOA5Q6Q788 366 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 ZNF654Q8IZM8 581 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 FANCBQ8NB91 859 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 DCAF4Q8WV16 495 aa11.92□□□□□ -0.5
SYNE2-215ENST00000554997 ZSCAN31Q96LW9 406 aaPredicted RBP11.92□□□□□ -0.5
SYNE2-215ENST00000554997 PALM3A6NDB9 673 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-215ENST00000554997 ZBTB43O43298 467 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 DDAH1O94760 285 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 PDHBP11177 359 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 BMP3P12645 472 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 HOXA7P31268 230 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-215ENST00000554997 SLC1A4P43007 532 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 TM4SF4P48230 202 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 NOGQ13253 232 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 ZYXQ15942 572 aaKnown RBP11.91□□□□□ -0.5
SYNE2-215ENST00000554997 CYP4F22Q6NT55 531 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 REM2Q8IYK8 340 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-215ENST00000554997 SPICE1Q8N0Z3 855 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 LARP6Q9BRS8 491 aaKnown RBP11.91□□□□□ -0.5
SYNE2-215ENST00000554997 TPCN1Q9ULQ1 816 aa11.91□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L15C9J2P7 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L13C9JLJ4 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L11C9JVI0 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L18D6R9N7 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L22D6RA61 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L17D6RBQ6 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L19D6RCP7 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 USP17L20D6RJB6 530 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 WDR46O15213 610 aaKnown RBP11.9□□□□□ -0.5
SYNE2-215ENST00000554997 RAD21O60216 631 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 PLA2G6O60733 806 aa11.9□□□□□ -0.5
SYNE2-215ENST00000554997 PARP1P09874 1014 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms