RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SEMA3EO15041 775 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 MAPK4P31152 587 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 BACE1P56817 501 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 SMAD3P84022 425 aaKnown RBP13.19□□□□□ -0.3
SHMT2-216ENST00000554975 MECOMQ03112 1051 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 SH3RF1Q7Z6J0 888 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 PLEKHH3Q7Z736 793 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 SPRYD3Q8NCJ5 442 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 RILPL2Q969X0 211 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 WDR18Q9BV38 432 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 ANO2Q9NQ90 1003 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 ZNFX1Q9P2E3 1918 aaKnown RBP13.19□□□□□ -0.3
SHMT2-216ENST00000554975 A0A1B0GUL7 405 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 NPM3O75607 178 aaKnown RBP13.18□□□□□ -0.3
SHMT2-216ENST00000554975 CNMDO75829 334 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 TIMM10P62072 90 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 MAP2K5Q13163 448 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 TJAP1Q5JTD0 557 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 GJC2Q5T442 439 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-216ENST00000554975 ZGPATQ8N5A5 531 aaKnown RBP13.18□□□□□ -0.3
SHMT2-216ENST00000554975 BCL11AQ9H165 835 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 DNAJC18Q9H819 358 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 AS3MTQ9HBK9 375 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 PRDM5Q9NQX1 630 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-216ENST00000554975 PRKAG2Q9UGJ0 569 aa13.18□□□□□ -0.3
SHMT2-216ENST00000554975 DDX20Q9UHI6 824 aaKnown RBP13.18□□□□□ -0.3
SHMT2-216ENST00000554975 MYH1P12882 1939 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 GBF1Q92538 1859 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TRIM43BA6NCK2 446 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 DNM1LO00429 736 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TRAK2O60296 914 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 IFIT2P09913 472 aaKnown RBP13.17□□□□□ -0.3
SHMT2-216ENST00000554975 CNGA1P29973 690 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 EPHB4P54760 987 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 GRIN2CQ14957 1233 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TRIM60Q495X7 471 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 ANO1Q5XXA6 986 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 KIAA1211Q6ZU35 1233 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 NPLOC4Q8TAT6 608 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 PI4K2BQ8TCG2 481 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 LPAR1Q92633 364 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TNPO1Q92973 898 aaKnown RBP13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TRIM43Q96BQ3 446 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-216ENST00000554975 XAGE2Q96GT9 111 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 IL1RAPL2Q9NP60 686 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 PDLIM7Q9NR12 457 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 DIAPH3Q9NSV4 1193 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 ECHDC1Q9NTX5 307 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 TMOD4Q9NZQ9 345 aa13.17□□□□□ -0.3
SHMT2-216ENST00000554975 ZBTB22O15209 634 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 ITGB8P26012 769 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 CYP2C19P33261 490 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 PLA2G5P39877 138 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 PI16Q6UXB8 463 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 SLC39A5Q6ZMH5 540 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 SLF2Q8IX21 1173 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 EDC3Q96F86 508 aaKnown RBP13.16□□□□□ -0.3
SHMT2-216ENST00000554975 INTS4Q96HW7 963 aaKnown RBP13.16□□□□□ -0.3
SHMT2-216ENST00000554975 EMILIN3Q9NT22 766 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 REV3LO60673 3130 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 ZNF236Q9UL36 1845 aa13.16□□□□□ -0.3
SHMT2-216ENST00000554975 PDS5AQ29RF7 1337 aaKnown RBP13.15□□□□□ -0.3
SHMT2-216ENST00000554975 GOLGA6L3A6NEY3 463 aa13.15□□□□□ -0.3
SHMT2-216ENST00000554975 GDF11O95390 407 aa13.15□□□□□ -0.3
SHMT2-216ENST00000554975 CD2BP2O95400 341 aaKnown RBP13.15□□□□□ -0.3
SHMT2-216ENST00000554975 IGHA2P01877 340 aa13.15□□□□□ -0.3
SHMT2-216ENST00000554975 MFSD14CQ5VZR4 134 aa13.15□□□□□ -0.3
SHMT2-216ENST00000554975 TICAM2Q86XR7 235 aa13.15□□□□□ -0.3
SHMT2-216ENST00000554975 CCAR1Q8IX12 1150 aaKnown RBP13.15□□□□□ -0.3
SHMT2-216ENST00000554975 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-216ENST00000554975 CHD9Q3L8U1 2897 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 TMEM265A0A087WTH1 108 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 USP17L10C9JJH3 530 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 SGSM2O43147 1006 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 CYBAP13498 195 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 HSPA4P34932 840 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 SNX17Q15036 470 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 TEX11Q8IYF3 940 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 SH3RF3Q8TEJ3 882 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-216ENST00000554975 NSUN4Q96CB9 384 aaKnown RBP13.14□□□□□ -0.31
SHMT2-216ENST00000554975 EVI5LQ96CN4 794 aa13.14□□□□□ -0.31
SHMT2-216ENST00000554975 HERC5Q9UII4 1024 aaKnown RBP13.14□□□□□ -0.31
SHMT2-216ENST00000554975 C19orf81C9J6K1 198 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 ASNSP08243 561 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 PTPREP23469 700 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 WDR78Q5VTH9 848 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 SPTY2D1Q68D10 685 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-216ENST00000554975 FERMT2Q96AC1 680 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 HMG20BQ9P0W2 317 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 BTBD7Q9P203 1132 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 ZBTB21Q9ULJ3 1066 aa13.13□□□□□ -0.31
SHMT2-216ENST00000554975 SLC15A5A6NIM6 579 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 MSCO60682 206 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 CYP2E1P05181 493 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-216ENST00000554975 HOXC6P09630 235 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 PDIA4P13667 645 aaKnown RBP13.12□□□□□ -0.31
SHMT2-216ENST00000554975 DNAJB2P25686 324 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 MRE11P49959 708 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 NEK4P51957 841 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms