RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 MKNK2Q9HBH9 465 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 SPDYE5A6NIY4 337 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 ORC4O43929 436 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 TOB2Q14106 344 aaPredicted RBP20.21■□□□□ 0.83
SHOX-204ENST00000554971 ABCB5Q2M3G0 1257 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 DEFB115Q30KQ5 88 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 CLEC10AQ8IUN9 316 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 OPTNQ96CV9 577 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 SLC10A4Q96EP9 437 aa20.21■□□□□ 0.83
SHOX-204ENST00000554971 LARP6Q9BRS8 491 aaKnown RBP20.21■□□□□ 0.83
SHOX-204ENST00000554971 SLC3A2P08195 630 aaKnown RBP20.2■□□□□ 0.82
SHOX-204ENST00000554971 ASNSP08243 561 aa20.2■□□□□ 0.82
SHOX-204ENST00000554971 ZIC5Q96T25 663 aa20.2■□□□□ 0.82
SHOX-204ENST00000554971 SLC10A3P09131 477 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 KRT85P78386 507 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 FAM47AQ5JRC9 791 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 MFSD6Q6ZSS7 791 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 ERO1BQ86YB8 467 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 OTUD5Q96G74 571 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 GDPD2Q9HCC8 539 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 NOL7Q9UMY1 257 aaKnown RBP20.19■□□□□ 0.82
SHOX-204ENST00000554971 IRF6O14896 467 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 MSNP26038 577 aaKnown RBP20.19■□□□□ 0.82
SHOX-204ENST00000554971 SEPT2Q15019 361 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 WNK4Q96J92 1243 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 CCDC17Q96LX7 622 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 LLPHQ9BRT6 129 aaKnown RBP20.19■□□□□ 0.82
SHOX-204ENST00000554971 PICK1Q9NRD5 415 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 CCDC39Q9UFE4 941 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 ZHX2Q9Y6X8 837 aa20.19■□□□□ 0.82
SHOX-204ENST00000554971 PLIN4Q96Q06 1357 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 E7EWF7 191 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 MPHOSPH10O00566 681 aaKnown RBP20.18■□□□□ 0.82
SHOX-204ENST00000554971 MKRN3Q13064 507 aaKnown RBP20.18■□□□□ 0.82
SHOX-204ENST00000554971 SPRYD7Q5W111 196 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 SIAH1Q8IUQ4 282 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 SCAND2PQ9GZW5 306 aaPredicted RBP20.18■□□□□ 0.82
SHOX-204ENST00000554971 ZNF287Q9HBT7 754 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 CENPFP49454 3210 aa20.18■□□□□ 0.82
SHOX-204ENST00000554971 VEGFBP49765 207 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 PPATQ06203 517 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 RRP12Q5JTH9 1297 aaKnown RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 NECAB1Q8N987 351 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 CAPNS2Q96L46 248 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 AFG3L2Q9Y4W6 797 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 THSD7BQ9C0I4 1608 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 IGKV6D-41A0A0C4DH26 115 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 VPS37CA5D8V6 355 aaPredicted RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 B4E1Z4 1266 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 RANBP6O60518 1105 aaKnown RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 NMT2O60551 498 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 PCP11498 1178 aaKnown RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 TFAP4Q01664 338 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 GRM1Q13255 1194 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 TMEM179Q6ZVK1 233 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 ZNF444Q8N0Y2 327 aaPredicted RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 DNAJC5GQ8N7S2 189 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 GTF3C6Q969F1 213 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 RNF41Q9H4P4 317 aaPredicted RBP20.17■□□□□ 0.82
SHOX-204ENST00000554971 IL17RBQ9NRM6 502 aa20.17■□□□□ 0.82
SHOX-204ENST00000554971 DNM1Q05193 864 aaKnown RBP20.16■□□□□ 0.82
SHOX-204ENST00000554971 PPIL2Q13356 520 aa20.16■□□□□ 0.82
SHOX-204ENST00000554971 FOXD4L6Q3SYB3 417 aaPredicted RBP20.16■□□□□ 0.82
SHOX-204ENST00000554971 FOXD4L3Q6VB84 417 aaPredicted RBP20.16■□□□□ 0.82
SHOX-204ENST00000554971 PAXIP1Q6ZW49 1069 aaPredicted RBP20.16■□□□□ 0.82
SHOX-204ENST00000554971 NEDD1Q8NHV4 660 aa20.16■□□□□ 0.82
SHOX-204ENST00000554971 TOMM22Q9NS69 142 aa20.16■□□□□ 0.82
SHOX-204ENST00000554971 GINM1Q9NU53 330 aa20.16■□□□□ 0.82
SHOX-204ENST00000554971 TCHHQ07283 1943 aa20.16■□□□□ 0.82
SHOX-204ENST00000554971 USP17L5A8MUK1 530 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 FIBPO43427 364 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 AOC2O75106 756 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 ZBTB48P10074 688 aaPredicted RBP20.15■□□□□ 0.82
SHOX-204ENST00000554971 DHX32Q7L7V1 743 aaKnown RBP20.15■□□□□ 0.82
SHOX-204ENST00000554971 MS4A4AQ96JQ5 239 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 CABP5Q9NP86 173 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 A0A1W2PRG0 241 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 KDM4AO75164 1064 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 TSPY3P0CV98 308 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 TSPY8P0CW00 308 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 DGKZQ13574 1117 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 FBXL16Q8N461 479 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 ACER1Q8TDN7 264 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 CCDC102AQ96A19 550 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 CEP95Q96GE4 821 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 ZSWIM5Q9P217 1185 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 KCNH4Q9UQ05 1017 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 KIF3AQ9Y496 699 aa20.15■□□□□ 0.82
SHOX-204ENST00000554971 LOC285556D6RIA3 1793 aa20.14■□□□□ 0.82
SHOX-204ENST00000554971 TRIM75PA6NK02 468 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 TSPY2A6NKD2 308 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 ZNF500O60304 480 aaPredicted RBP20.14■□□□□ 0.81
SHOX-204ENST00000554971 ECE1P42892 770 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 SPP2Q13103 211 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 ZNF280CQ8ND82 737 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 WDR18Q9BV38 432 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 ZSCAN16Q9H4T2 348 aaPredicted RBP20.14■□□□□ 0.81
SHOX-204ENST00000554971 CYB5R4Q7L1T6 521 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 AGXT2Q9BYV1 514 aa20.14■□□□□ 0.81
SHOX-204ENST00000554971 ICA1Q05084 483 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms