RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 RIOK1Q9BRS2 568 aaKnown RBP11.06□□□□□ -0.64
SYNE2-209ENST00000553308 SPATC1LQ9H0A9 340 aa11.06□□□□□ -0.64
SYNE2-209ENST00000553308 NOP58Q9Y2X3 529 aaKnown RBP11.06□□□□□ -0.64
SYNE2-209ENST00000553308 A0A0C4DFX4 3053 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 COBLO75128 1261 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 POLR3DP05423 398 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-209ENST00000553308 ERCC3P19447 782 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 GABPAQ06546 454 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 MAP3K12Q12852 859 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 COG2Q14746 738 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 SNX17Q15036 470 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 KIAA1755Q5JYT7 1200 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 PRAMEF19Q5SWL8 479 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 SH3RF1Q7Z6J0 888 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 ARRDC4Q8NCT1 418 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 MAFAQ8NHW3 353 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-209ENST00000553308 TANGO6Q9C0B7 1094 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 PDLIM7Q9NR12 457 aa11.05□□□□□ -0.64
SYNE2-209ENST00000553308 TRIM43BA6NCK2 446 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 MPHOSPH10O00566 681 aaKnown RBP11.04□□□□□ -0.64
SYNE2-209ENST00000553308 SEPT4O43236 478 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 ADCYAP1R1P41586 468 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 LRRC41Q15345 812 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 FAM47AQ5JRC9 791 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 ZKSCAN2Q63HK3 967 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 CLEC10AQ8IUN9 316 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 SLC44A5Q8NCS7 719 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 SHCBP1Q8NEM2 672 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 MYLIPQ8WY64 445 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 FERMT2Q96AC1 680 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 TRIM43Q96BQ3 446 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-209ENST00000553308 TTYH1Q9H313 450 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-209ENST00000553308 SEMA6BQ9H3T3 888 aa11.04□□□□□ -0.64
SYNE2-209ENST00000553308 MAGEB6P1A0A0J9YX57 407 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 STRNO43815 780 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 CYP2D6P10635 497 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 PLS1Q14651 629 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 AACSQ86V21 672 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 NCAPG2Q86XI2 1143 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 ATG4CQ96DT6 458 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 MCM9Q9NXL9 1143 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 HOXC10Q9NYD6 342 aa11.03□□□□□ -0.64
SYNE2-209ENST00000553308 PARP14Q460N5 1801 aa11.02□□□□□ -0.64
SYNE2-209ENST00000553308 UNC80Q8N2C7 3258 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 FLOT1O75955 427 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 RLBP1P12271 317 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 PDE6AP16499 860 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 ITGB8P26012 769 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 DSG3P32926 999 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 SMAD3P84022 425 aaKnown RBP11.02□□□□□ -0.65
SYNE2-209ENST00000553308 SAMD1Q6SPF0 538 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-209ENST00000553308 ITPRIPQ8IWB1 547 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 SPICE1Q8N0Z3 855 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 MB21D1Q8N884 522 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 SDR42E1Q8WUS8 393 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 MAML3Q96JK9 1138 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 CRNKL1Q9BZJ0 848 aaKnown RBP11.02□□□□□ -0.65
SYNE2-209ENST00000553308 EXOC6BQ9Y2D4 811 aa11.02□□□□□ -0.65
SYNE2-209ENST00000553308 AKR1B1P15121 316 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 FOSL2P15408 326 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 EPHB4P54760 987 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 TLE2Q04725 743 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 SLC9C2Q5TAH2 1124 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 C1orf53Q5VUE5 145 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 CEP85Q6P2H3 762 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 TMED8Q6PL24 325 aaPredicted RBP11.01□□□□□ -0.65
SYNE2-209ENST00000553308 TMEM179Q6ZVK1 233 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 SIAH1Q8IUQ4 282 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 FTSJ3Q8IY81 847 aaKnown RBP11.01□□□□□ -0.65
SYNE2-209ENST00000553308 ABRAQ8N0Z2 381 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 LCORLQ8N3X6 602 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 DYNLL2Q96FJ2 89 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 RNPC3Q96LT9 517 aaKnown RBP11.01□□□□□ -0.65
SYNE2-209ENST00000553308 MROH8Q9H579 483 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 DCP1AQ9NPI6 582 aaPredicted RBP11.01□□□□□ -0.65
SYNE2-209ENST00000553308 XPNPEP3Q9NQH7 507 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 SLC5A4Q9NY91 659 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 PHF24Q9UPV7 400 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 ZNF532Q9HCE3 1301 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 MYH8P13535 1937 aa11.01□□□□□ -0.65
SYNE2-209ENST00000553308 DNAH12Q6ZR08 3092 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 COL11A1P12107 1806 aaPredicted RBP11□□□□□ -0.65
SYNE2-209ENST00000553308 SMIM22K7EJ46 135 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 PGK1P00558 417 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 PGK2P07205 417 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 CLTBP09497 229 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 FCER1AP12319 257 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 ICA1Q05084 483 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 TMEM132BQ14DG7 1078 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 LENG1Q96BZ8 264 aaPredicted RBP11□□□□□ -0.65
SYNE2-209ENST00000553308 VCPKMTQ9H867 229 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 ARHGEF10LQ9HCE6 1279 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 IL1RAPL2Q9NP60 686 aa11□□□□□ -0.65
SYNE2-209ENST00000553308 A0A1W2PQ45 241 aaPredicted RBP10.99□□□□□ -0.65
SYNE2-209ENST00000553308 A0A1W2PQY0 241 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 TCRBV5S4A2TA0A5A2 114 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 PQBP1O60828 265 aaKnown RBP10.99□□□□□ -0.65
SYNE2-209ENST00000553308 RARBP10826 455 aa10.99□□□□□ -0.65
SYNE2-209ENST00000553308 TAL1P17542 331 aaPredicted RBP10.99□□□□□ -0.65
SYNE2-209ENST00000553308 TTF1Q15361 905 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms