RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 ANXA1P04083 346 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 CCDC192P0DO97 292 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 ATP5JP18859 108 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 RPS6KB1P23443 525 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 ERCC5P28715 1186 aaPredicted RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 KCNQ4P56696 695 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 HMGN5P82970 282 aaKnown RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 NMIQ13287 307 aaPredicted RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 GCKRQ14397 625 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 ME3Q16798 604 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 ADCK5Q3MIX3 580 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 USPL1Q5W0Q7 1092 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 PIBF1Q8WXW3 757 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 LRRC59Q96AG4 307 aaKnown RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 EAF2Q96CJ1 260 aaPredicted RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 KAZALD1Q96I82 304 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 TRIM47Q96LD4 638 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 METTL22Q9BUU2 404 aaPredicted RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 ZCCHC2Q9C0B9 1178 aaKnown RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 BICC1Q9H694 974 aaKnown RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 PA2G4Q9UQ80 394 aaKnown RBP7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 PCDHGC4Q9Y5F7 938 aa7.05□□□□□ -1.28
CHMP4A-210ENST00000552620 FIBPO43427 364 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 CAVIN2O95810 425 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 IGKV5-2P06315 115 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 HMGB1P09429 215 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 SNRPA1P09661 255 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 GRNP28799 593 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 ZNF76P36508 570 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 HDLBPQ00341 1268 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 LAMC2Q13753 1193 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 PROSER3Q2NL68 480 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 CWF19L2Q2TBE0 894 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 FOXD4L6Q3SYB3 417 aaPredicted RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 ZNF790Q6PG37 636 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 FOXD4L3Q6VB84 417 aaPredicted RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 KRT28Q7Z3Y7 464 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 RNF34Q969K3 372 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 KIFC2Q96AC6 838 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 FSD1Q9BTV5 496 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 CCDC8Q9H0W5 538 aaPredicted RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 NUCKS1Q9H1E3 243 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 C12orf49Q9H741 205 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 SLC52A2Q9HAB3 445 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 SPTLC3Q9NUV7 552 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 TPCN1Q9ULQ1 816 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 JCADQ9P266 1359 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 MED23Q9ULK4 1368 aa7.04□□□□□ -1.28
CHMP4A-210ENST00000552620 TCHHQ07283 1943 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 UQCRHLA0A096LP55 91 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 VPS37CA5D8V6 355 aaPredicted RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 KHNYNO15037 678 aaKnown RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 TAF5LO75529 589 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 LARGE1O95461 756 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 UQCRHP07919 91 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 HCLS1P14317 486 aaPredicted RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 SNRPBP14678 240 aaKnown RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 CPA1P15085 419 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 CES1P23141 567 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 ST3GAL1Q11201 340 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 CCINQ13939 588 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 NOLC1Q14978 699 aaKnown RBP eCLIP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 RABL6Q3YEC7 729 aaPredicted RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 GIMAP6Q6P9H5 292 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 IFNL2Q8IZJ0 200 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 RAPGEF4Q8WZA2 1011 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 FAM227BQ96M60 508 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 PNMA5Q96PV4 448 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 NEK1Q96PY6 1258 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 LLPHQ9BRT6 129 aaKnown RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 BOLA2Q9H3K6 86 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 ZSCAN16Q9H4T2 348 aaPredicted RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 GPR108Q9NPR9 543 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 DDX19AQ9NUU7 478 aaKnown RBP7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 FAM8A1Q9UBU6 413 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 MRC1P22897 1456 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 ADAMTS7Q9UKP4 1686 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 CAMTA1Q9Y6Y1 1673 aa7.03□□□□□ -1.28
CHMP4A-210ENST00000552620 ABCC6O95255 1503 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 A0A0D9SFI3 127 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 GOLGA6L4A6NEF3 574 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 PHF20L1A8MW92 1017 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 EFSO43281 561 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 IGSF3O75054 1194 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 PHKG2P15735 406 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 RFX5P48382 616 aaPredicted RBP7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 PTSQ03393 145 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 AIMP1Q12904 312 aaKnown RBP7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 TOB2Q14106 344 aaPredicted RBP7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 MAP3K11Q16584 847 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 MCMDC2Q4G0Z9 681 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 TNNI3KQ59H18 835 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 LDLRAD1Q5T700 205 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 ATL3Q6DD88 541 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 RBM43Q6ZSC3 357 aaKnown RBP7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 COPS6Q7L5N1 327 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 GALNT12Q8IXK2 581 aa7.02□□□□□ -1.29
CHMP4A-210ENST00000552620 NECAB1Q8N987 351 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms