RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RILPL1Q5EBL4 403 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 AKNAD1Q5T1N1 836 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 SRGAP1Q7Z6B7 1085 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 NLRP10Q86W26 655 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CRACR2BQ8N4Y2 399 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 MAGEB6Q8N7X4 407 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 IGSF22Q8N9C0 903 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ACRBPQ8NEB7 543 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 STAMQ92783 540 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PANX2Q96RD6 677 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CDC5LQ99459 802 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 FOXP1Q9H334 677 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PDE11AQ9HCR9 933 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 STRN4Q9NRL3 753 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 FEZ2Q9UHY8 353 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ASAP1Q9ULH1 1129 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 MYH3P11055 1940 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 NID2Q14112 1375 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 TOGARAM1Q9Y4F4 1720 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PPP1R3GB7ZBB8 358 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 MFAP3LO75121 409 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 CASP14P31944 242 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 CTSWP56202 376 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ERVK-24P63145 666 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 RASGRF1Q13972 1273 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 NKX1-1Q15270 411 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ZNF569Q5MCW4 686 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 CDKAL1Q5VV42 579 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 RASGRP2Q7LDG7 609 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SH3RF1Q7Z6J0 888 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SLC35F6Q8N357 371 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 LCORLQ8N3X6 602 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TRIML1Q8N9V2 468 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 NAPBQ9H115 298 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ABCB6Q9NP58 842 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 DACH1Q9UI36 760 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 CDC23Q9UJX2 597 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TNS3Q68CZ2 1445 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SPATA31A3Q5VYP0 1347 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 PRDM1O75626 825 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 FGFR2P21802 821 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ERCC5P28715 1186 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ARHGAP25P42331 645 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 HSPA2P54652 639 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 MCM6Q14566 821 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TTF1Q15361 905 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SAFBQ15424 915 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-212ENST00000552491 ZSCAN26Q16670 478 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 MUM1L1Q5H9M0 696 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SPATA1Q5VX52 437 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 JAKMIP3Q5VZ66 844 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 GIGYF2Q6Y7W6 1299 aaKnown RBP6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TOM1L2Q6ZVM7 507 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TXLNBQ8N3L3 684 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 MSANTD4Q8NCY6 345 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 NUP133Q8WUM0 1156 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 PAGE5Q96GU1 130 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TOMM22Q9NS69 142 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 VPS54Q9P1Q0 977 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 RAB21Q9UL25 225 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 LHX6Q9UPM6 363 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 DOCK2Q92608 1830 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 MYH2Q9UKX2 1941 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 SYNRGQ9UMZ2 1314 aa6.16□□□□□ -1.42
LIMA1-212ENST00000552491 TIAM2Q8IVF5 1701 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.15□□□□□ -1.42
LIMA1-212ENST00000552491 ANKRD18BA2A2Z9 1011 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 IRS4O14654 1257 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-212ENST00000552491 TRIM66O15016 1216 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 RHOXF2BP0C7M4 288 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 CCT6AP40227 531 aaKnown RBP6.15□□□□□ -1.42
LIMA1-212ENST00000552491 LMAN1P49257 510 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 VSNL1P62760 191 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 GPS2Q13227 327 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 WTAPQ15007 396 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 BRD3Q15059 726 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 PKN1Q16512 942 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 FOXR1Q6PIV2 292 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 MFSD6Q6ZSS7 791 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 ZNF654Q8IZM8 581 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 SPATA5Q8NB90 893 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 NOA1Q8NC60 698 aaKnown RBP6.15□□□□□ -1.42
LIMA1-212ENST00000552491 SYMPKQ92797 1274 aaKnown RBP6.15□□□□□ -1.42
LIMA1-212ENST00000552491 MTRQ99707 1265 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 RHOXF2Q9BQY4 288 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 L1RE1Q9UN81 338 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 TBC1D2BQ9UPU7 963 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 WDR17Q8IZU2 1322 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 CDHR2Q9BYE9 1310 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 KAT6BQ8WYB5 2073 aa6.15□□□□□ -1.42
LIMA1-212ENST00000552491 BCORQ6W2J9 1755 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 SLIT2O94813 1529 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 ADAMTS3O15072 1205 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 DEXIO95424 95 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 FECHP22830 423 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 PBX2P40425 430 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 USP5P45974 858 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 KANK3Q6NY19 840 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 KIF6Q6ZMV9 814 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 TRIM22Q8IYM9 498 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms