RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 WTAPQ15007 396 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 PRRT2Q7Z6L0 340 aaPredicted RBP24.9■■□□□ 1.58
VPS29-206ENST00000549578 MKL1Q969V6 931 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 MS4A4AQ96JQ5 239 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 TMEM87BQ96K49 555 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 SH2D4AQ9H788 454 aa24.9■■□□□ 1.58
VPS29-206ENST00000549578 WDR33Q9C0J8 1336 aaKnown RBP24.89■■□□□ 1.58
VPS29-206ENST00000549578 SH2B2O14492 632 aaPredicted RBP24.89■■□□□ 1.57
VPS29-206ENST00000549578 RAD21O60216 631 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 AOC2O75106 756 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 TOP1P11387 765 aaKnown RBP24.89■■□□□ 1.57
VPS29-206ENST00000549578 GTF2A2P52657 109 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 IFIT1BQ5T764 474 aaKnown RBP24.89■■□□□ 1.57
VPS29-206ENST00000549578 ANKS1AQ92625 1134 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 LY9Q9HBG7 655 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 EMILIN3Q9NT22 766 aa24.89■■□□□ 1.57
VPS29-206ENST00000549578 C19orf81C9J6K1 198 aa24.88■■□□□ 1.57
VPS29-206ENST00000549578 KIAA1755Q5JYT7 1200 aa24.88■■□□□ 1.57
VPS29-206ENST00000549578 MTA3Q9BTC8 594 aa24.88■■□□□ 1.57
VPS29-206ENST00000549578 CCL15-CCL14A0A0B4J2E2 113 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 NOGQ13253 232 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 CCL15Q16663 113 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 SH3D19Q5HYK7 790 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 USP17L2Q6R6M4 530 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 GADL1Q6ZQY3 521 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 SPICE1Q8N0Z3 855 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 CHMP4CQ96CF2 233 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 VCPKMTQ9H867 229 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 KAT14Q9H8E8 782 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 MTMR7Q9Y216 660 aa24.87■■□□□ 1.57
VPS29-206ENST00000549578 CETPP11597 493 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 USP14P54578 494 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 KIF23Q02241 960 aaPredicted RBP24.86■■□□□ 1.57
VPS29-206ENST00000549578 MOGSQ13724 837 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 Q6ZUG5 572 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 BRI3BPQ8WY22 251 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 GOPCQ9HD26 462 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 TMOD4Q9NZQ9 345 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 LOC285556D6RIA3 1793 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 MANSC4A6NHS7 340 aaPredicted RBP24.86■■□□□ 1.57
VPS29-206ENST00000549578 F5H6K3 240 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 FGD1P98174 961 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 KLRC3Q07444 240 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 RASGRP2Q7LDG7 609 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 PNMA1Q8ND90 353 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 PDRG1Q9NUG6 133 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 SYNPO2Q9UMS6 1093 aa24.86■■□□□ 1.57
VPS29-206ENST00000549578 NDUFB10O96000 172 aa24.85■■□□□ 1.57
VPS29-206ENST00000549578 GMCL1P1Q8NEA9 526 aa24.85■■□□□ 1.57
VPS29-206ENST00000549578 C12orf42Q96LP6 360 aa24.85■■□□□ 1.57
VPS29-206ENST00000549578 CEP350Q5VT06 3117 aa24.85■■□□□ 1.57
VPS29-206ENST00000549578 VCAM1P19320 739 aa24.84■■□□□ 1.57
VPS29-206ENST00000549578 LIFRP42702 1097 aa24.84■■□□□ 1.57
VPS29-206ENST00000549578 TREML2Q5T2D2 321 aa24.84■■□□□ 1.57
VPS29-206ENST00000549578 SLFN13Q68D06 897 aa24.84■■□□□ 1.57
VPS29-206ENST00000549578 NFXL1Q6ZNB6 911 aa24.84■■□□□ 1.57
VPS29-206ENST00000549578 NEK4P51957 841 aa24.83■■□□□ 1.57
VPS29-206ENST00000549578 FASTKD5Q7L8L6 764 aaKnown RBP24.83■■□□□ 1.57
VPS29-206ENST00000549578 PROCA1Q8NCQ7 364 aaPredicted RBP24.83■■□□□ 1.57
VPS29-206ENST00000549578 LPAR1Q92633 364 aa24.83■■□□□ 1.57
VPS29-206ENST00000549578 BRF1Q92994 677 aa24.83■■□□□ 1.57
VPS29-206ENST00000549578 NUP88Q99567 741 aaPredicted RBP24.83■■□□□ 1.57
VPS29-206ENST00000549578 PTPN18Q99952 460 aa24.83■■□□□ 1.57
VPS29-206ENST00000549578 TESPA1A2RU30 521 aaPredicted RBP24.82■■□□□ 1.56
VPS29-206ENST00000549578 GPAT2Q6NUI2 795 aa24.82■■□□□ 1.56
VPS29-206ENST00000549578 CCDC69A6NI79 296 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 BTBD19C9JJ37 291 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 SREBF2Q12772 1141 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 TOB2Q14106 344 aaPredicted RBP24.81■■□□□ 1.56
VPS29-206ENST00000549578 SGMS1Q86VZ5 419 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 TMTC2Q8N394 836 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 AGXT2Q9BYV1 514 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 AGTPBP1Q9UPW5 1226 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 THSD7BQ9C0I4 1608 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 IGF2BP3O00425 579 aaKnown RBP eCLIP24.81■■□□□ 1.56
VPS29-206ENST00000549578 APOBRQ0VD83 1088 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 FAM83BQ5T0W9 1011 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 ZNF654Q8IZM8 581 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 FAM43AQ8N2R8 423 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 FBXL16Q8N461 479 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 LARP6Q9BRS8 491 aaKnown RBP24.81■■□□□ 1.56
VPS29-206ENST00000549578 MYL10Q9BUA6 226 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 RPAP3Q9H6T3 665 aaPredicted RBP24.81■■□□□ 1.56
VPS29-206ENST00000549578 BRPF3Q9ULD4 1205 aa24.81■■□□□ 1.56
VPS29-206ENST00000549578 PDHBP11177 359 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 MAP2K2P36507 400 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 SLC1A4P43007 532 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 INHBEP58166 350 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 RABEP1Q15276 862 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 CATIPQ7Z7H3 387 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 RAB11FIP4Q86YS3 637 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 GMCL1Q96IK5 515 aa24.8■■□□□ 1.56
VPS29-206ENST00000549578 ISY1Q9ULR0 285 aaKnown RBP24.8■■□□□ 1.56
VPS29-206ENST00000549578 KLF18A0A0U1RQI7 1052 aa24.79■■□□□ 1.56
VPS29-206ENST00000549578 WDR46O15213 610 aaKnown RBP24.79■■□□□ 1.56
VPS29-206ENST00000549578 TM4SF4P48230 202 aa24.79■■□□□ 1.56
VPS29-206ENST00000549578 AK2P54819 239 aa24.79■■□□□ 1.56
VPS29-206ENST00000549578 DNAJC5GQ8N7S2 189 aa24.79■■□□□ 1.56
VPS29-206ENST00000549578 SLC12A7Q9Y666 1083 aa24.79■■□□□ 1.56
VPS29-206ENST00000549578 TROAPQ12815 778 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms