RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 CACNA1GO43497 2377 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 RFX5P48382 616 aaPredicted RBP17.27■□□□□ 0.36
PTCH1-217ENST00000548420 ZKSCAN2Q63HK3 967 aa17.27■□□□□ 0.36
PTCH1-217ENST00000548420 FAM178BQ8IXR5 827 aa17.27■□□□□ 0.36
PTCH1-217ENST00000548420 GTF3C2Q8WUA4 911 aaPredicted RBP17.27■□□□□ 0.36
PTCH1-217ENST00000548420 DCDC2CA8MYV0 355 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 COBLO75128 1261 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 UBTFL1P0CB47 393 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-217ENST00000548420 RHBDL3P58872 404 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 CSPP1Q1MSJ5 1256 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 PSRC1Q6PGN9 363 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-217ENST00000548420 FRAT1Q92837 279 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-217ENST00000548420 MEIS3Q99687 375 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 CERS4Q9HA82 394 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 HDAC5Q9UQL6 1122 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 SIPA1L1O43166 1804 aa17.26■□□□□ 0.35
PTCH1-217ENST00000548420 DCHS1Q96JQ0 3298 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 TRIOO75962 3097 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 C19orf81C9J6K1 198 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 SLC5A1P13866 664 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 CCDC174Q6PII3 467 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 PRSS33Q8NF86 280 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 XPNPEP3Q9NQH7 507 aa17.25■□□□□ 0.35
PTCH1-217ENST00000548420 PTPRZ1P23471 2315 aaPredicted RBP17.25■□□□□ 0.35
PTCH1-217ENST00000548420 POTEB3A0JP26 581 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 USP17L10C9JJH3 530 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 GNAI3P08754 354 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 ALADP13716 330 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 ADORA2AP29274 412 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 BTDP43251 543 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 CCNA1P78396 465 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 POTEBQ6S5H4 581 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 HFE2Q6ZVN8 426 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 KLHDC4Q8TBB5 520 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 PPP1R12CQ9BZL4 782 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 IL23AQ9NPF7 189 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 IVNS1ABPQ9Y6Y0 642 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 ZNF236Q9UL36 1845 aa17.24■□□□□ 0.35
PTCH1-217ENST00000548420 SALL1Q9NSC2 1324 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 GTPBP6O43824 516 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-217ENST00000548420 ARHGEF15O94989 841 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 IFIT1P09914 478 aaKnown RBP17.23■□□□□ 0.35
PTCH1-217ENST00000548420 OTOP2Q7RTS6 562 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 DPP9Q86TI2 863 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 TMEM199Q8N511 208 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 CLUAP1Q96AJ1 413 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 LENG1Q96BZ8 264 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-217ENST00000548420 PCDHA11Q9Y5I1 949 aa17.23■□□□□ 0.35
PTCH1-217ENST00000548420 FGBP02675 491 aa17.22■□□□□ 0.35
PTCH1-217ENST00000548420 CYP2C18P33260 490 aa17.22■□□□□ 0.35
PTCH1-217ENST00000548420 CDK7P50613 346 aa17.22■□□□□ 0.35
PTCH1-217ENST00000548420 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
PTCH1-217ENST00000548420 TMEM57Q8N5G2 664 aa17.22■□□□□ 0.35
PTCH1-217ENST00000548420 VWCEQ96DN2 955 aa17.22■□□□□ 0.35
PTCH1-217ENST00000548420 FAM163AQ96GL9 167 aaPredicted RBP17.22■□□□□ 0.35
PTCH1-217ENST00000548420 ADAMTS4O75173 837 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 ACLYP53396 1101 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 MTX1Q13505 466 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 RNF180Q86T96 592 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 ZNF384Q8TF68 577 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 DNAJC18Q9H819 358 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 STARD7Q9NQZ5 370 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 FBXO3Q9UK99 471 aa17.21■□□□□ 0.35
PTCH1-217ENST00000548420 NPM3O75607 178 aaKnown RBP17.2■□□□□ 0.34
PTCH1-217ENST00000548420 KRT37O76014 449 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 RLBP1P12271 317 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 IL9P15248 144 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 TAL1P17542 331 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-217ENST00000548420 IER5LQ5T953 404 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 ATG9AQ7Z3C6 839 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-217ENST00000548420 UMODL1Q5DID0 1318 aa17.2■□□□□ 0.34
PTCH1-217ENST00000548420 EYA2O00167 538 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 APBB1O00213 710 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 DCXO43602 365 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 LPXNO60711 386 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 CA3P07451 260 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 ASNSP08243 561 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 RARBP10826 455 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 SSTR3P32745 418 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-217ENST00000548420 IRX5P78411 483 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-217ENST00000548420 CCSAPQ6IQ19 270 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-217ENST00000548420 LBX2Q6XYB7 198 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 CATSPERGQ6ZRH7 1159 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 SPRED2Q7Z698 418 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 COPRSQ9NQ92 184 aa17.19■□□□□ 0.34
PTCH1-217ENST00000548420 GPR75-ASB3A0A0A6YYF3 556 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L15C9J2P7 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L13C9JLJ4 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L11C9JVI0 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L18D6R9N7 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L22D6RA61 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L17D6RBQ6 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L19D6RCP7 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L20D6RJB6 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 GFRA3O60609 400 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 CIAO1O76071 339 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 GDF11O95390 407 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 USP17L24Q0WX57 530 aa17.18■□□□□ 0.34
PTCH1-217ENST00000548420 GRB10Q13322 594 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms