RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SPTLC2O15270 562 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 DTNBO60941 627 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 PPP6R2O75170 966 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 SLC39A14Q15043 492 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 GPATCH4Q5T3I0 446 aaKnown RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 OTUD7BQ6GQQ9 843 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 FAM83AQ86UY5 434 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 DIS3L2Q8IYB7 885 aaKnown RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 SRBD1Q8N5C6 995 aaKnown RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 LINC00301Q8NCQ3 95 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 CEP95Q96GE4 821 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 CHAMP1Q96JM3 812 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 PRMT6Q96LA8 375 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 USP28Q96RU2 1077 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 PHF20Q9BVI0 1012 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 TDRD3Q9H7E2 651 aaKnown RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 TMEM63CQ9P1W3 806 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 FAM198AQ9UFP1 575 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 SEC63Q9UGP8 760 aaKnown RBP15.48■□□□□ 0.07
PTCH1-215ENST00000547672 BCS1LQ9Y276 419 aa15.48■□□□□ 0.07
PTCH1-215ENST00000547672 SCN9AQ15858 1988 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 IGKV6D-41A0A0C4DH26 115 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 KLRF2D3W0D1 207 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 PPFIA3O75145 1194 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 SHMT1P34896 483 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 NLRP5P59047 1200 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 CXCL9Q07325 125 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 TNFAIP1Q13829 316 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 TATDN1Q6P1N9 297 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 TMEM179Q6ZVK1 233 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 DPF2Q92785 391 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 MKL1Q969V6 931 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 RRP36Q96EU6 259 aaKnown RBP15.47■□□□□ 0.07
PTCH1-215ENST00000547672 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.47■□□□□ 0.07
PTCH1-215ENST00000547672 NYAP2Q9P242 653 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 ZNF70Q9UC06 446 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-215ENST00000547672 MAD2L2Q9UI95 211 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 MORC2Q9Y6X9 1032 aaPredicted RBP15.47■□□□□ 0.07
PTCH1-215ENST00000547672 MYH6P13533 1939 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 MYH15Q9Y2K3 1946 aa15.47■□□□□ 0.07
PTCH1-215ENST00000547672 CNTNAP5Q8WYK1 1306 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 MPHOSPH10O00566 681 aaKnown RBP15.46■□□□□ 0.07
PTCH1-215ENST00000547672 PLEKHA8P1O95397 391 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 TRAPPC10P48553 1259 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 CEBPZQ03701 1054 aaKnown RBP15.46■□□□□ 0.07
PTCH1-215ENST00000547672 EVX2Q03828 476 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 TCP10Q12799 353 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 NFIAQ12857 509 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 PKN1Q16512 942 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 SPDYE2Q495Y8 402 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 RBM26Q5T8P6 1007 aaKnown RBP15.46■□□□□ 0.07
PTCH1-215ENST00000547672 AIFM3Q96NN9 605 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 NUP62CLQ9H1M0 184 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 GRPEL1Q9HAV7 217 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 CLIP2Q9UDT6 1046 aa15.46■□□□□ 0.07
PTCH1-215ENST00000547672 MYH8P13535 1937 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 TBC1D12O60347 775 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 CAVIN2O95810 425 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 AKR1B1P15121 316 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 GNA11P29992 359 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 GUCY1A2P33402 732 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 PTGER2P43116 358 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 TRAF1Q13077 416 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 CCAR1Q8IX12 1150 aaKnown RBP15.45■□□□□ 0.06
PTCH1-215ENST00000547672 MRPS27Q92552 414 aaKnown RBP15.45■□□□□ 0.06
PTCH1-215ENST00000547672 HOOK2Q96ED9 719 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 TSPY26PQ9H489 355 aa15.45■□□□□ 0.06
PTCH1-215ENST00000547672 FER1L6Q2WGJ9 1857 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 BTBD18B2RXH4 712 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 KINO60870 393 aaKnown RBP15.44■□□□□ 0.06
PTCH1-215ENST00000547672 CUTAO60888 179 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 CMA1P23946 247 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 ZNF280AP59817 542 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-215ENST00000547672 FAM160A1Q05DH4 1040 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 MAP3K11Q16584 847 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 ABCB5Q2M3G0 1257 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 CMTR1Q8N1G2 835 aaKnown RBP15.44■□□□□ 0.06
PTCH1-215ENST00000547672 DCAF4Q8WV16 495 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 CCDC34Q96HJ3 373 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 CSRNP1Q96S65 589 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 GLT8D2Q9H1C3 349 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 TNMDQ9H2S6 317 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 GINM1Q9NU53 330 aa15.44■□□□□ 0.06
PTCH1-215ENST00000547672 ZNF646O15015 1829 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-215ENST00000547672 SYCE3A1L190 88 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 DDTLA6NHG4 134 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-215ENST00000547672 TRIM75PA6NK02 468 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 CCDC192P0DO97 292 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 SNHG28P0DPA3 235 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 PGBD1Q96JS3 809 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.43■□□□□ 0.06
PTCH1-215ENST00000547672 C6orf50Q9HD87 102 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 BARHL2Q9NY43 387 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 VPS54Q9P1Q0 977 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 HOOK1Q9UJC3 728 aaKnown RBP15.43■□□□□ 0.06
PTCH1-215ENST00000547672 PCDHA7Q9UN72 937 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 KCNJ14Q9UNX9 436 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 CLIC4Q9Y696 253 aa15.43■□□□□ 0.06
PTCH1-215ENST00000547672 BRCA1P38398 1863 aaKnown RBP15.42■□□□□ 0.06
PTCH1-215ENST00000547672 KIF28PB7ZC32 967 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms