RNA–Protein interactions for RNA: ENST00000543660.1

NPIPB4-219, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 5

Gene NPIPB4, Length 353 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-219	ENST00000543660	ASB2	Q96Q27	587 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PUS3	Q9BZE2	481 aa	Known RBP	6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	SLC6A16	Q9GZN6	736 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	MYH16	Q9H6N6	1097 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PICK1	Q9NRD5	415 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CNNM1	Q9NRU3	951 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	SUGT1	Q9Y2Z0	365 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CHMP3	Q9Y3E7	222 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	MYO9B	Q13459	2157 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PTPRF	P10586	1907 aa		6.11	□□□□□ -1.43
NPIPB4-219	ENST00000543660	MAST3	O60307	1309 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	SLURP2	P0DP57	97 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	GCLC	P48506	637 aa	Predicted RBP	6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CTC1	Q2NKJ3	1217 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CCDC57	Q2TAC2	916 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	SH3BP5L	Q7L8J4	393 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CCDC84	Q86UT8	332 aa	Predicted RBP	6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	BANK1	Q8NDB2	785 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	USP6NL	Q92738	828 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	UHRF1	Q96T88	793 aa	Predicted RBP	6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	SENP6	Q9GZR1	1112 aa	Predicted RBP	6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PKD2L1	Q9P0L9	805 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	MORF4L1	Q9UBU8	362 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	DAGLA	Q9Y4D2	1042 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CHD9	Q3L8U1	2897 aa		6.1	□□□□□ -1.43
NPIPB4-219	ENST00000543660	LTBP2	Q14767	1821 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PHIP	Q8WWQ0	1821 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	MAST2	Q6P0Q8	1798 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PEX10	O60683	326 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CTNND1	O60716	968 aa	Known RBP	6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	FRAT2	O75474	233 aa	Predicted RBP	6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CFH	P08603	1231 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	RTP1	P59025	263 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	DIXDC1	Q155Q3	683 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	CCL14	Q16627	93 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	TAF7L	Q5H9L4	462 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PLA2G2C	Q5R387	149 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	VPS37D	Q86XT2	251 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	TRMT44	Q8IYL2	757 aa	Known RBP	6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PROCA1	Q8NCQ7	364 aa	Predicted RBP	6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	DNAAF4	Q8WXU2	420 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	BAD	Q92934	168 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	NUDT12	Q9BQG2	462 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	C1QTNF1	Q9BXJ1	281 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	STK31	Q9BXU1	1019 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	ASCC2	Q9H1I8	757 aa	Predicted RBP	6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	PRKAG2	Q9UGJ0	569 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	IVNS1ABP	Q9Y6Y0	642 aa		6.09	□□□□□ -1.43
NPIPB4-219	ENST00000543660	AK9	Q5TCS8	1911 aa		6.09	□□□□□ -1.44
NPIPB4-219	ENST00000543660	TRIM43B	A6NCK2	446 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	AXIN1	O15169	862 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	ZKSCAN1	P17029	563 aa	Predicted RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	ERCC3	P19447	782 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	CLCN1	P35523	988 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	RPIA	P49247	311 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SMCP	P49901	116 aa	Predicted RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	MRPS5	P82675	430 aa	Known RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	NFX1	Q12986	1120 aa	Known RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	PDE3A	Q14432	1141 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	CAVIN4	Q5BKX8	364 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	BEND3	Q5T5X7	828 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	VGLL2	Q8N8G2	317 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	CCER1	Q8TC90	406 aa	Predicted RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SOCS4	Q8WXH5	440 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	TRIM43	Q96BQ3	446 aa	Predicted RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	IDI2	Q9BXS1	227 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	TXNRD2	Q9NNW7	524 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	USP40	Q9NVE5	1235 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	THEG	Q9P2T0	379 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	ADAMTS8	Q9UP79	889 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	LRRFIP2	Q9Y608	721 aa	Known RBP	6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	CHD7	Q9P2D1	2997 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	REV3L	O60673	3130 aa		6.08	□□□□□ -1.44
NPIPB4-219	ENST00000543660	MROH5	Q6ZUA9	1318 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	DDTL	A6NHG4	134 aa	Predicted RBP	6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	DNM1L	O00429	736 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	ENTPD3	O75355	529 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	MS4A1	P11836	297 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	ITGB8	P26012	769 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	PRDX5	P30044	214 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	RGS3	P49796	1198 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	EPHB4	P54760	987 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	HMGCS2	P54868	508 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	CALD1	Q05682	793 aa	Known RBP	6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	FOXC1	Q12948	553 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SPP2	Q13103	211 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	FKBP5	Q13451	457 aa	Predicted RBP	6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SNX17	Q15036	470 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660		Q3C1V9	767 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	LRRC24	Q50LG9	513 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	MORN1	Q5T089	497 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	AKNAD1	Q5T1N1	836 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SLC39A5	Q6ZMH5	540 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	SH3RF1	Q7Z6J0	888 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	PPM1E	Q8WY54	764 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	LPAR1	Q92633	364 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	GLMN	Q92990	594 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	KAZALD1	Q96I82	304 aa		6.07	□□□□□ -1.44
NPIPB4-219	ENST00000543660	NECAB3	Q96P71	396 aa	Predicted RBP	6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms