RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 METAP2P50579 478 aaKnown RBP eCLIP32.41■■■□□ 2.78
CCM2-218ENST00000541586 SEPT2Q15019 361 aa32.41■■■□□ 2.78
CCM2-218ENST00000541586 PAXIP1Q6ZW49 1069 aaPredicted RBP32.41■■■□□ 2.78
CCM2-218ENST00000541586 MICU3Q86XE3 530 aa32.41■■■□□ 2.78
CCM2-218ENST00000541586 CNKSR2Q8WXI2 1034 aa32.41■■■□□ 2.78
CCM2-218ENST00000541586 STX6O43752 255 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 DHX16O60231 1041 aaKnown RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 ZNF157P51786 506 aaPredicted RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 NOL9Q5SY16 702 aaKnown RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 MYL10Q9BUA6 226 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 MYH8P13535 1937 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 WDR33Q9C0J8 1336 aaKnown RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 PTPDC1A2A3K4 754 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 PTPRAP18433 802 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 RXRAP19793 462 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 FOXD4L5Q5VV16 416 aaPredicted RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 SYNE3Q6ZMZ3 975 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 TMEM179Q6ZVK1 233 aa32.4■■■□□ 2.78
CCM2-218ENST00000541586 FOXD4L4Q8WXT5 416 aaPredicted RBP32.4■■■□□ 2.78
CCM2-218ENST00000541586 NMT2O60551 498 aa32.39■■■□□ 2.78
CCM2-218ENST00000541586 DDX11Q96FC9 970 aa32.39■■■□□ 2.78
CCM2-218ENST00000541586 ZHX2Q9Y6X8 837 aa32.39■■■□□ 2.78
CCM2-218ENST00000541586 MKRN3Q13064 507 aaKnown RBP32.38■■■□□ 2.77
CCM2-218ENST00000541586 GRM1Q13255 1194 aa32.38■■■□□ 2.77
CCM2-218ENST00000541586 IFIT1BQ5T764 474 aaKnown RBP32.38■■■□□ 2.77
CCM2-218ENST00000541586 RGMBQ6NW40 437 aa32.38■■■□□ 2.77
CCM2-218ENST00000541586 CLEC10AQ8IUN9 316 aa32.38■■■□□ 2.77
CCM2-218ENST00000541586 UNCXA6NJT0 531 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 PDCP20941 246 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 GUCY1A2P33402 732 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 HMGN5P82970 282 aaKnown RBP32.37■■■□□ 2.77
CCM2-218ENST00000541586 ATP2B2Q01814 1243 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 LARP1BQ659C4 914 aaKnown RBP32.37■■■□□ 2.77
CCM2-218ENST00000541586 NEDD1Q8NHV4 660 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 OPTNQ96CV9 577 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 OTUD5Q96G74 571 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 GNL3Q9BVP2 549 aaKnown RBP eCLIP32.37■■■□□ 2.77
CCM2-218ENST00000541586 GOLGA8AA7E2F4 631 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 USP17L5A8MUK1 530 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 ZNF654Q8IZM8 581 aa32.37■■■□□ 2.77
CCM2-218ENST00000541586 CPLX1O14810 134 aa32.36■■■□□ 2.77
CCM2-218ENST00000541586 CLEC17AQ6ZS10 378 aa32.36■■■□□ 2.77
CCM2-218ENST00000541586 ERO1BQ86YB8 467 aa32.36■■■□□ 2.77
CCM2-218ENST00000541586 CCDC144CPQ8IYA2 1237 aa32.36■■■□□ 2.77
CCM2-218ENST00000541586 NID2Q14112 1375 aa32.36■■■□□ 2.77
CCM2-218ENST00000541586 CDC27P30260 824 aa32.35■■■□□ 2.77
CCM2-218ENST00000541586 ADD1P35611 737 aaKnown RBP32.35■■■□□ 2.77
CCM2-218ENST00000541586 GBP4Q96PP9 640 aa32.35■■■□□ 2.77
CCM2-218ENST00000541586 IL17RBQ9NRM6 502 aa32.35■■■□□ 2.77
CCM2-218ENST00000541586 GINM1Q9NU53 330 aa32.35■■■□□ 2.77
CCM2-218ENST00000541586 OTOFQ9HC10 1997 aa32.35■■■□□ 2.77
CCM2-218ENST00000541586 PPFIA3O75145 1194 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 ZSCAN22P10073 491 aaPredicted RBP32.34■■■□□ 2.77
CCM2-218ENST00000541586 RCAN1P53805 252 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 DEFB115Q30KQ5 88 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 FAM184AQ8NB25 1140 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 CEP95Q96GE4 821 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 FAM217BQ9NTX9 383 aaPredicted RBP32.34■■■□□ 2.77
CCM2-218ENST00000541586 MCM4P33991 863 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 ICA1Q05084 483 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 KANSL2Q9H9L4 492 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 TCP11L1Q9NUJ3 509 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 MTMR6Q9Y217 621 aa32.34■■■□□ 2.77
CCM2-218ENST00000541586 PDIA4P13667 645 aaKnown RBP32.33■■■□□ 2.77
CCM2-218ENST00000541586 RCSD1Q6JBY9 416 aa32.33■■■□□ 2.77
CCM2-218ENST00000541586 SPDYE5A6NIY4 337 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 TRIM75PA6NK02 468 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 HSPA6P17066 643 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 PPATQ06203 517 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 SPP2Q13103 211 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 CYP4F22Q6NT55 531 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 STX8Q9UNK0 236 aa32.32■■■□□ 2.76
CCM2-218ENST00000541586 IRF6O14896 467 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 BAG4O95429 457 aaKnown RBP32.31■■■□□ 2.76
CCM2-218ENST00000541586 CATIPQ7Z7H3 387 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 AS3MTQ9HBK9 375 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 MTMR4Q9NYA4 1195 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 CLIP2Q9UDT6 1046 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 ATAD5Q96QE3 1844 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 DOCK1Q14185 1865 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 VPS37CA5D8V6 355 aaPredicted RBP32.31■■■□□ 2.76
CCM2-218ENST00000541586 EEF2P13639 858 aaKnown RBP32.31■■■□□ 2.76
CCM2-218ENST00000541586 FDPSP14324 419 aaKnown RBP32.31■■■□□ 2.76
CCM2-218ENST00000541586 GJA5P36382 358 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 CCDC178Q5BJE1 867 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 DGKHQ86XP1 1220 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 NUP133Q8WUM0 1156 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 WNK4Q96J92 1243 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 KIF3AQ9Y496 699 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 AFG3L2Q9Y4W6 797 aa32.31■■■□□ 2.76
CCM2-218ENST00000541586 RTN1Q16799 776 aa32.3■■■□□ 2.76
CCM2-218ENST00000541586 RASAL3Q86YV0 1011 aa32.3■■■□□ 2.76
CCM2-218ENST00000541586 FANCBQ8NB91 859 aa32.3■■■□□ 2.76
CCM2-218ENST00000541586 ZNF280CQ8ND82 737 aa32.3■■■□□ 2.76
CCM2-218ENST00000541586 ACER1Q8TDN7 264 aa32.3■■■□□ 2.76
CCM2-218ENST00000541586 IGKV6D-41A0A0C4DH26 115 aa32.29■■■□□ 2.76
CCM2-218ENST00000541586 CDKL5O76039 1030 aa32.29■■■□□ 2.76
CCM2-218ENST00000541586 ECE1P42892 770 aa32.29■■■□□ 2.76
CCM2-218ENST00000541586 ZYXQ15942 572 aaKnown RBP32.29■■■□□ 2.76
CCM2-218ENST00000541586 NTRK3Q16288 839 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms